Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC54_RS13600 Genome accession   NZ_CP019121
Coordinates   2698206..2699432 (+) Length   408 a.a.
NCBI ID   WP_101958938.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2693206..2704432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS13580 (FORC54_2464) ampD 2694265..2694837 (-) 573 WP_080526792.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FORC54_RS13585 (FORC54_2465) nadC 2694930..2695817 (+) 888 WP_080526793.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC54_RS13590 (FORC54_2466) pilA 2696040..2696465 (+) 426 WP_038964707.1 pilin Machinery gene
  FORC54_RS13595 (FORC54_2467) pilB 2696470..2698158 (+) 1689 WP_101958937.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC54_RS13600 (FORC54_2468) pilC 2698206..2699432 (+) 1227 WP_101958938.1 type II secretion system F family protein Machinery gene
  FORC54_RS13605 (FORC54_2469) pilD 2699525..2700394 (+) 870 WP_101958939.1 prepilin peptidase Machinery gene
  FORC54_RS13610 (FORC54_2470) coaE 2700396..2701004 (+) 609 WP_045593985.1 dephospho-CoA kinase -
  FORC54_RS13615 (FORC54_2471) zapD 2701037..2701777 (+) 741 WP_017421189.1 cell division protein ZapD -
  FORC54_RS13620 yacG 2701840..2702034 (+) 195 WP_038941426.1 DNA gyrase inhibitor YacG -
  FORC54_RS13625 (FORC54_2472) rplS 2702258..2702611 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  FORC54_RS13630 (FORC54_2473) trmD 2702653..2703402 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC54_RS13635 (FORC54_2474) rimM 2703430..2703978 (-) 549 WP_101958940.1 ribosome maturation factor RimM -
  FORC54_RS13640 (FORC54_2475) rpsP 2703994..2704242 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45224.58 Da        Isoelectric Point: 10.3569

>NTDB_id=213335 FORC54_RS13600 WP_101958938.1 2698206..2699432(+) (pilC) [Vibrio vulnificus strain FORC_054]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVAIGEQSGNLDQVFERLAFYRE
KNEQLRAKVVKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=213335 FORC54_RS13600 WP_101958938.1 2698206..2699432(+) (pilC) [Vibrio vulnificus strain FORC_054]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCATTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGGTCAAGGCATTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCAGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTGGTCACCGCCATGTACCTGCCGATC
TTTAATTTAATGAGCGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

98.039

0.765
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment