Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BV404_RS13965 Genome accession   NZ_CP019118
Coordinates   2971811..2972926 (-) Length   371 a.a.
NCBI ID   WP_075989114.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2966811..2977926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS13935 hemF 2967369..2968283 (-) 915 WP_055452391.1 oxygen-dependent coproporphyrinogen oxidase -
  BV404_RS13940 - 2968303..2968860 (-) 558 WP_024374800.1 L-threonylcarbamoyladenylate synthase -
  BV404_RS13945 purE 2969058..2969543 (+) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BV404_RS13950 - 2969547..2970680 (+) 1134 WP_075989113.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BV404_RS13955 - 2970714..2971301 (-) 588 WP_055452389.1 type I DNA topoisomerase -
  BV404_RS13960 - 2971332..2971808 (-) 477 WP_020332565.1 DUF494 family protein -
  BV404_RS13965 dprA 2971811..2972926 (-) 1116 WP_075989114.1 DNA-processing protein DprA Machinery gene
  BV404_RS13970 - 2972926..2974044 (-) 1119 WP_075989115.1 LysM peptidoglycan-binding domain-containing protein -
  BV404_RS13975 def 2974184..2974696 (+) 513 WP_020332568.1 peptide deformylase -
  BV404_RS13980 fmt 2974715..2975662 (+) 948 WP_075989117.1 methionyl-tRNA formyltransferase -
  BV404_RS13985 rsmB 2975713..2976993 (+) 1281 WP_020430418.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40499.02 Da        Isoelectric Point: 6.5017

>NTDB_id=213288 BV404_RS13965 WP_075989114.1 2971811..2972926(-) (dprA) [Vibrio fluvialis strain 12605]
MLKRDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=213288 BV404_RS13965 WP_075989114.1 2971811..2972926(-) (dprA) [Vibrio fluvialis strain 12605]
ATGCTCAAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTGGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAGT
TTGCCGCACAATTGGTCGAGCACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGACTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GCCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAACTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis MC58

37.186

100

0.399
  dprA Neisseria meningitidis strain C311

37.186

100

0.399
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Acinetobacter baumannii strain A118

42.229

91.914

0.388
  dprA Acinetobacter baumannii D1279779

42.183

91.375

0.385
  dprA Neisseria gonorrhoeae MS11

35.678

100

0.383
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.19

100

0.375

Multiple sequence alignment