Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BTU49_RS14350 Genome accession   NZ_CP018756
Coordinates   3144946..3146202 (+) Length   418 a.a.
NCBI ID   WP_079222952.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain AA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3122266..3144076 3144946..3146202 flank 870


Gene organization within MGE regions


Location: 3122266..3146202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTU49_RS14255 - 3122266..3122940 (+) 675 WP_079222934.1 hypothetical protein -
  BTU49_RS14260 - 3122934..3123947 (+) 1014 WP_079222935.1 hypothetical protein -
  BTU49_RS14265 - 3123941..3124957 (+) 1017 WP_079222936.1 TraB/GumN family protein -
  BTU49_RS14275 - 3125621..3127354 (+) 1734 WP_152027108.1 ABC transporter transmembrane domain-containing protein -
  BTU49_RS14280 sucD 3127473..3128348 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  BTU49_RS14285 sucC 3128370..3129539 (-) 1170 WP_079222939.1 ADP-forming succinate--CoA ligase subunit beta -
  BTU49_RS14290 - 3129974..3131587 (+) 1614 WP_079222940.1 ATP-binding protein -
  BTU49_RS14295 pilR 3131643..3133016 (+) 1374 WP_079222941.1 sigma-54 dependent transcriptional regulator Regulator
  BTU49_RS14300 pilB 3133139..3134869 (-) 1731 WP_079222942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BTU49_RS14305 - 3135144..3136019 (+) 876 WP_079222943.1 glycosyltransferase family 2 protein -
  BTU49_RS14310 - 3136016..3137179 (+) 1164 WP_079222944.1 glycosyltransferase family 4 protein -
  BTU49_RS14315 - 3137330..3138580 (+) 1251 WP_108747253.1 oligosaccharide flippase family protein -
  BTU49_RS14320 - 3138543..3139658 (-) 1116 WP_079222946.1 glycosyltransferase -
  BTU49_RS14325 - 3139655..3140515 (-) 861 WP_161490384.1 FkbM family methyltransferase -
  BTU49_RS14330 - 3140624..3141739 (+) 1116 WP_079222948.1 glycosyltransferase -
  BTU49_RS14335 - 3141725..3142141 (-) 417 WP_079222949.1 pilin -
  BTU49_RS14340 - 3142145..3144076 (-) 1932 WP_079222950.1 hypothetical protein -
  BTU49_RS14345 pilE 3144154..3144588 (-) 435 WP_079222951.1 pilin Machinery gene
  BTU49_RS14350 pilC 3144946..3146202 (+) 1257 WP_079222952.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45858.27 Da        Isoelectric Point: 10.1703

>NTDB_id=209961 BTU49_RS14350 WP_079222952.1 3144946..3146202(+) (pilC) [Stenotrophomonas maltophilia strain AA1]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKVKPKPMFGAAGKAVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVIAVALAVSSILLIWVVPQFEDVFRGFGADLPAFTQLIVNMSRFMVSWWWL
ILLVVIGALVGFTMAYKRSPKMQHTLDRLVLKVPVIGQIMNNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQQNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMIFIGVIV
GGLVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=209961 BTU49_RS14350 WP_079222952.1 3144946..3146202(+) (pilC) [Stenotrophomonas maltophilia strain AA1]
ATGTCTGTCAGTCGCAGTGCGATAAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTTCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGTGGCGTGAAGATGAAAGGGGAGCAGCTGGCGAAGAACGCCAATCTGCTGCGGGCCGAACTGCGCCGCC
AGGGCATCAACCCCGGGCAGGTGAAGGTCAAGCCCAAGCCGATGTTCGGCGCCGCCGGCAAGGCGGTCAGCCCGAAGGAC
ATCGCGTTTTTCAGCCGGCAGATGGCCACCATGATGAAGTCCGGCGTGCCGATCGTGTCGGCGCTGGAGATCATCGGCAG
CGGCCACAAGAACCCGCGCATGAAGAAGATGGTGGATGGCATCCGCACGGATATCGAGGGCGGCTCCTCGCTCTACGAAG
CCATCAGCAAGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACCTTGTCAGGGCCGGTGAAGGCGCCGGCGTGCTGGAA
ACGGTGCTGGACACCGTCGCCAACTACAAGGAAAACATCGAGGCCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
GGCCATGGTCATCGCCGTGGCACTGGCGGTCAGCTCCATCCTGCTGATCTGGGTCGTGCCCCAGTTCGAGGACGTGTTCC
GCGGCTTCGGTGCCGATCTGCCGGCCTTCACCCAGCTGATCGTGAACATGTCCCGCTTCATGGTTTCCTGGTGGTGGCTG
ATCCTGCTCGTGGTGATCGGTGCCCTCGTAGGGTTCACCATGGCCTACAAGCGCTCTCCGAAGATGCAGCACACGCTGGA
CCGGCTGGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGAACAACAGTTCGATCGCCCGCTTCGCCCGTACCACGGCGG
TGACCTTCAAGGCCGGCGTTCCGCTGGTGGAGGCACTGGGCATCGTGGCCGGCGCCACCGGCAACAAGGTCTACGAGGAA
GCCGTGCTGCGCATGCGCGACGACGTCTCCGTCGGCTACCCGGTCAACATGGCCATGAAGCAGCAGAATCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCGGGTGCCCTGGACACCATGCTGTTCAAGGTAGCCGAGTATTATG
AGCAGGAGGTCAACAATGCCGTTGACGCGCTGAGCAGCCTGCTGGAACCGATGATCATGATCTTCATCGGCGTCATCGTG
GGTGGCCTCGTCATCGGTATGTACCTCCCAATCTTCAAACTTGCTTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.709

97.129

0.512
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.737

0.51
  pilC Legionella pneumophila strain ERS1305867

52.381

95.455

0.5
  pilC Acinetobacter baumannii D1279779

51.889

94.976

0.493
  pilG Neisseria gonorrhoeae MS11

43.97

95.215

0.419
  pilG Neisseria meningitidis 44/76-A

43.719

95.215

0.416
  pilC Vibrio cholerae strain A1552

40.494

96.89

0.392
  pilC Vibrio campbellii strain DS40M4

40.75

95.694

0.39
  pilC Thermus thermophilus HB27

37.965

96.411

0.366

Multiple sequence alignment