Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BTU49_RS14295 Genome accession   NZ_CP018756
Coordinates   3131643..3133016 (+) Length   457 a.a.
NCBI ID   WP_079222941.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain AA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3122266..3144076 3131643..3133016 within 0


Gene organization within MGE regions


Location: 3122266..3144076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTU49_RS14255 - 3122266..3122940 (+) 675 WP_079222934.1 hypothetical protein -
  BTU49_RS14260 - 3122934..3123947 (+) 1014 WP_079222935.1 hypothetical protein -
  BTU49_RS14265 - 3123941..3124957 (+) 1017 WP_079222936.1 TraB/GumN family protein -
  BTU49_RS14275 - 3125621..3127354 (+) 1734 WP_152027108.1 ABC transporter transmembrane domain-containing protein -
  BTU49_RS14280 sucD 3127473..3128348 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  BTU49_RS14285 sucC 3128370..3129539 (-) 1170 WP_079222939.1 ADP-forming succinate--CoA ligase subunit beta -
  BTU49_RS14290 - 3129974..3131587 (+) 1614 WP_079222940.1 ATP-binding protein -
  BTU49_RS14295 pilR 3131643..3133016 (+) 1374 WP_079222941.1 sigma-54 dependent transcriptional regulator Regulator
  BTU49_RS14300 pilB 3133139..3134869 (-) 1731 WP_079222942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BTU49_RS14305 - 3135144..3136019 (+) 876 WP_079222943.1 glycosyltransferase family 2 protein -
  BTU49_RS14310 - 3136016..3137179 (+) 1164 WP_079222944.1 glycosyltransferase family 4 protein -
  BTU49_RS14315 - 3137330..3138580 (+) 1251 WP_108747253.1 oligosaccharide flippase family protein -
  BTU49_RS14320 - 3138543..3139658 (-) 1116 WP_079222946.1 glycosyltransferase -
  BTU49_RS14325 - 3139655..3140515 (-) 861 WP_161490384.1 FkbM family methyltransferase -
  BTU49_RS14330 - 3140624..3141739 (+) 1116 WP_079222948.1 glycosyltransferase -
  BTU49_RS14335 - 3141725..3142141 (-) 417 WP_079222949.1 pilin -
  BTU49_RS14340 - 3142145..3144076 (-) 1932 WP_079222950.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49616.89 Da        Isoelectric Point: 6.6447

>NTDB_id=209958 BTU49_RS14295 WP_079222941.1 3131643..3133016(+) (pilR) [Stenotrophomonas maltophilia strain AA1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAHHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNSERPVAAAATEQAARLLGSSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARASGPFIPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRALGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPD
LAGSILARLARSHGRATPLLAPSALDALSHYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAAGGPAAPEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=209958 BTU49_RS14295 WP_079222941.1 3131643..3133016(+) (pilR) [Stenotrophomonas maltophilia strain AA1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTTGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAACTGGTGAGCGAGATCGCCCACCACTACCCACGTACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTCCTGCGGGGCCTGGTCAAGCACGCCCTGGAACTCAACAACAGCGAGCGGCCGGTCGCCGCGGCGGCCA
CCGAACAGGCCGCGCGCCTGCTCGGCAGTTCGCCGGCGATGGACGTGCTGCGCACCACCATCGGCAAGGTTGCCCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAGCTGGTCGCGCGCACCATCCATGCGCAGGGCGCACG
CGCCTCGGGCCCTTTCATTCCGGTCAACTGCGGCGCCATCCCCACCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCCCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTGCACTGGGTGCGGC
CAACGAGGAACCGGTGGACGTGCGCATTCTTTCGGCCACCCACAAGGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCATGACCTCTACTACCGCATCAACGTCATCGAACTGAAAGTGCCGCCACTGCGCGAGCGCCGCCAGGACCTGCCGGAC
CTGGCCGGTTCGATCCTGGCCCGGCTGGCCCGCAGCCATGGCCGTGCCACTCCGCTGCTGGCGCCCTCGGCGCTGGACGC
CTTGTCCCACTACGGCTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCTTGGCCCTGGCCGAGGAAG
ACCGTATCGGTGCCGATGACCTGCGCCTGCCGCAGCACGCCCCGCGCGCCGCCGGAGGCCCTGCCGCGCCCGAGGCCGTG
GTCGACCTGCAGCCTGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACGCGCACCGCCGCGCAGCTCGGCATCACCTTCCGGGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.914

99.125

0.624
  pilR Acinetobacter baumannii strain A118

48.052

100

0.486

Multiple sequence alignment