Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BST98_RS01970 | Genome accession | NZ_CP018297 |
| Coordinates | 394981..395376 (-) | Length | 131 a.a. |
| NCBI ID | WP_069530744.1 | Uniprot ID | - |
| Organism | Photobacterium damselae strain Phdp Wu-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 389981..400376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BST98_RS01950 (BST98_01945) | coaE | 390334..390936 (-) | 603 | WP_109374725.1 | dephospho-CoA kinase | - |
| BST98_RS01955 (BST98_01950) | pilD | 390938..391816 (-) | 879 | WP_109374726.1 | prepilin peptidase | Machinery gene |
| BST98_RS01960 (BST98_01955) | pilC | 391999..393225 (-) | 1227 | WP_086367530.1 | type II secretion system F family protein | Machinery gene |
| BST98_RS01965 (BST98_01960) | pilB | 393290..394981 (-) | 1692 | WP_109374727.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BST98_RS01970 (BST98_01965) | pilA | 394981..395376 (-) | 396 | WP_069530744.1 | pilin | Machinery gene |
| BST98_RS01975 (BST98_01970) | ampD | 395762..396340 (+) | 579 | WP_068945541.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BST98_RS01980 (BST98_01975) | pdhR | 396700..397473 (+) | 774 | WP_005297609.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BST98_RS01985 (BST98_01980) | aceE | 397554..400214 (+) | 2661 | WP_109374728.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13226.12 Da Isoelectric Point: 6.2327
>NTDB_id=207853 BST98_RS01970 WP_069530744.1 394981..395376(-) (pilA) [Photobacterium damselae strain Phdp Wu-1]
MKGQKGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGALASALATATALKTNYEDYIAVSGAAPTTSAAIGATNFELGTV
TVTSGAIEVIVTKGGGSGSGVTLERSSDSWSCEVSASSSTIKLNGCTTKSI
MKGQKGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGALASALATATALKTNYEDYIAVSGAAPTTSAAIGATNFELGTV
TVTSGAIEVIVTKGGGSGSGVTLERSSDSWSCEVSASSSTIKLNGCTTKSI
Nucleotide
Download Length: 396 bp
>NTDB_id=207853 BST98_RS01970 WP_069530744.1 394981..395376(-) (pilA) [Photobacterium damselae strain Phdp Wu-1]
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGGTCATTGGCGTGTTATCAGCAATTGCAAT
ACCTAAATACCAACAATACGTAGAAAAAGGAGCATTAGCTTCTGCATTAGCTACTGCTACTGCATTAAAAACTAATTATG
AAGATTATATTGCTGTTAGCGGTGCAGCACCAACAACATCCGCTGCTATTGGCGCAACAAATTTTGAACTAGGTACAGTG
ACAGTCACATCTGGAGCTATTGAAGTTATAGTAACAAAAGGAGGTGGTTCAGGTAGTGGGGTAACATTAGAAAGATCTTC
TGATTCATGGTCCTGTGAAGTAAGTGCTTCAAGCAGCACCATTAAATTGAATGGTTGTACTACAAAGTCAATTTAA
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGGTCATTGGCGTGTTATCAGCAATTGCAAT
ACCTAAATACCAACAATACGTAGAAAAAGGAGCATTAGCTTCTGCATTAGCTACTGCTACTGCATTAAAAACTAATTATG
AAGATTATATTGCTGTTAGCGGTGCAGCACCAACAACATCCGCTGCTATTGGCGCAACAAATTTTGAACTAGGTACAGTG
ACAGTCACATCTGGAGCTATTGAAGTTATAGTAACAAAAGGAGGTGGTTCAGGTAGTGGGGTAACATTAGAAAGATCTTC
TGATTCATGGTCCTGTGAAGTAAGTGCTTCAAGCAGCACCATTAAATTGAATGGTTGTACTACAAAGTCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.887 |
100 |
0.519 |
| pilA | Vibrio cholerae strain A1552 |
47.887 |
100 |
0.519 |
| pilA | Vibrio cholerae C6706 |
47.887 |
100 |
0.519 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.912 |
100 |
0.435 |
| pilA | Acinetobacter baumannii strain A118 |
40.288 |
100 |
0.427 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.443 |
93.13 |
0.405 |
| comP | Acinetobacter baylyi ADP1 |
37.121 |
100 |
0.374 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40 |
91.603 |
0.366 |
| pilA/pilA1 | Eikenella corrodens VA1 |
31.788 |
100 |
0.366 |