Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BST98_RS01960 Genome accession   NZ_CP018297
Coordinates   391999..393225 (-) Length   408 a.a.
NCBI ID   WP_086367530.1    Uniprot ID   -
Organism   Photobacterium damselae strain Phdp Wu-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386999..398225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST98_RS01935 (BST98_01930) mutT 388641..389063 (-) 423 WP_109374724.1 8-oxo-dGTP diphosphatase MutT -
  BST98_RS01940 (BST98_01935) yacG 389311..389520 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  BST98_RS01945 (BST98_01940) zapD 389529..390266 (-) 738 WP_005297594.1 cell division protein ZapD -
  BST98_RS01950 (BST98_01945) coaE 390334..390936 (-) 603 WP_109374725.1 dephospho-CoA kinase -
  BST98_RS01955 (BST98_01950) pilD 390938..391816 (-) 879 WP_109374726.1 prepilin peptidase Machinery gene
  BST98_RS01960 (BST98_01955) pilC 391999..393225 (-) 1227 WP_086367530.1 type II secretion system F family protein Machinery gene
  BST98_RS01965 (BST98_01960) pilB 393290..394981 (-) 1692 WP_109374727.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BST98_RS01970 (BST98_01965) pilA 394981..395376 (-) 396 WP_069530744.1 pilin Machinery gene
  BST98_RS01975 (BST98_01970) ampD 395762..396340 (+) 579 WP_068945541.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BST98_RS01980 (BST98_01975) pdhR 396700..397473 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45003.15 Da        Isoelectric Point: 10.0330

>NTDB_id=207851 BST98_RS01960 WP_086367530.1 391999..393225(-) (pilC) [Photobacterium damselae strain Phdp Wu-1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTTPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=207851 BST98_RS01960 WP_086367530.1 391999..393225(-) (pilC) [Photobacterium damselae strain Phdp Wu-1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCCTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACTGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
CCCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGTAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGCTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCGACCGGGGAAGAAACGGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGTGCTGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACCTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGAGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTAATTGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment