Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   BSR20_RS09560 Genome accession   NZ_CP018189
Coordinates   2055047..2055988 (-) Length   313 a.a.
NCBI ID   WP_045771803.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050047..2060988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09520 (BSR20_09625) - 2050122..2051315 (-) 1194 WP_002885831.1 acetate kinase -
  BSR20_RS09525 (BSR20_09630) comYH 2051372..2052328 (-) 957 WP_014632544.1 class I SAM-dependent methyltransferase Machinery gene
  BSR20_RS09530 (BSR20_09635) comGG 2052373..2052690 (-) 318 WP_045001363.1 competence type IV pilus minor pilin ComGG -
  BSR20_RS09535 (BSR20_09640) comYF 2052668..2053105 (-) 438 WP_014632542.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR20_RS09540 (BSR20_09645) comGE 2053092..2053322 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  BSR20_RS09545 (BSR20_09650) comYD 2053354..2053782 (-) 429 WP_269434102.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR20_RS09550 (BSR20_09655) comYC 2053742..2054056 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR20_RS09555 (BSR20_09660) comYB 2054065..2055165 (-) 1101 WP_156209968.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR20_RS09560 (BSR20_09665) comYA 2055047..2055988 (-) 942 WP_045771803.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR20_RS09565 (BSR20_09670) - 2056068..2056430 (-) 363 WP_002887019.1 DUF1033 family protein -
  BSR20_RS09570 (BSR20_09675) rpoC 2056593..2060231 (-) 3639 WP_002887020.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35311.37 Da        Isoelectric Point: 5.7041

>NTDB_id=206949 BSR20_RS09560 WP_045771803.1 2055047..2055988(-) (comYA) [Streptococcus salivarius strain ICDC3]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGQRVSLRLSTVGDYRGLESLVIRVLHSERRELVYWNQGIQPIMDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDNLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSVAGV
YERLLDLGVDKSELDNALQGIVYMRLIKGGGVIDFASENFQSHSSTSWNQQLEGLVKQGYLTEGDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=206949 BSR20_RS09560 WP_045771803.1 2055047..2055988(-) (comYA) [Streptococcus salivarius strain ICDC3]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATTTATGTCATTCCACGTCA
GGATAATTACGAGCTCTATATGCGAGTTGGCCAGGAGAGGAGATTAATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTAGGTGAGAAGCGTAGGAGTCAACTAGGTTCCTGTGACTATGAT
TGTGGTGATGGTCAAAGGGTTTCTCTGCGTTTGTCTACCGTTGGGGATTATCGCGGCTTAGAAAGTTTAGTTATTCGTGT
TCTACATTCTGAACGTCGAGAATTAGTGTACTGGAATCAAGGAATCCAGCCTATTATGGATGCTTTGGATTATCGTGGCT
TATATCTCTTTGCAGGTCCCGTTGGTTCTGGAAAGACTACGCTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTGATTTCGATTGAGGATCCTGTGGAAATTAAACAGGATAATGTTTTGCAACTACAGGTGAATCAAGCAATTGACAT
GACCTATGATAATTTGATTAAGCTATCACTACGCCATCGCCCGGATGTTTTGATTATTGGAGAAATTCGAGATAAGGAGA
CTGCTCGAGCGGTTATTAGAGCTAGTCTGACGGGGGTGACTGTTCTTTCAACTATTCACGCAAAGAGTGTTGCAGGTGTT
TATGAGCGTCTTCTGGACCTCGGTGTAGATAAGTCTGAGTTGGATAATGCTCTTCAAGGGATTGTCTACATGCGTCTGAT
TAAGGGAGGAGGTGTGATTGATTTTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATATCTCACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

65.495

100

0.655
  comYA Streptococcus mutans UA140

65.495

100

0.655
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.916

99.361

0.655
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

99.361

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

99.361

0.642
  comYA Streptococcus gordonii str. Challis substr. CH1

62.939

100

0.629
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.577

99.681

0.604
  comGA Lactococcus lactis subsp. cremoris KW2

51.768

99.361

0.514

Multiple sequence alignment