Detailed information NTG0206945

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BSR20_RS09535
• Genome accession: NZ_CP018189
• Coordinates: 2052668..2053105 (-)
• Length: 145 a.a.
• NCBI ID: WP_014632542.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ICDC3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2047668..2058105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR20_RS09500 (BSR20_09605)	-	2047707..2048369 (-)	663	WP_045771802.1	CPBP family intramembrane glutamic endopeptidase	-
BSR20_RS09505 (BSR20_09610)	-	2048482..2048928 (-)	447	WP_045001368.1	hypothetical protein	-
BSR20_RS09510 (BSR20_09615)	-	2049006..2049662 (-)	657	WP_014632546.1	CPBP family intramembrane glutamic endopeptidase	-
BSR20_RS09515 (BSR20_09620)	-	2049674..2049871 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
BSR20_RS09520 (BSR20_09625)	-	2050122..2051315 (-)	1194	WP_002885831.1	acetate kinase	-
BSR20_RS09525 (BSR20_09630)	comYH	2051372..2052328 (-)	957	WP_014632544.1	class I SAM-dependent methyltransferase	Machinery gene
BSR20_RS09530 (BSR20_09635)	comGG	2052373..2052690 (-)	318	WP_045001363.1	competence type IV pilus minor pilin ComGG	-
BSR20_RS09535 (BSR20_09640)	comYF	2052668..2053105 (-)	438	WP_014632542.1	competence type IV pilus minor pilin ComGF	Machinery gene
BSR20_RS09540 (BSR20_09645)	comGE	2053092..2053322 (-)	231	WP_013991265.1	competence type IV pilus minor pilin ComGE	-
BSR20_RS09545 (BSR20_09650)	comYD	2053354..2053782 (-)	429	WP_269434102.1	competence type IV pilus minor pilin ComGD	Machinery gene
BSR20_RS09550 (BSR20_09655)	comYC	2053742..2054056 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
BSR20_RS09555 (BSR20_09660)	comYB	2054065..2055165 (-)	1101	WP_156209968.1	competence type IV pilus assembly protein ComGB	Machinery gene
BSR20_RS09560 (BSR20_09665)	comYA	2055047..2055988 (-)	942	WP_045771803.1	competence type IV pilus ATPase ComGA	Machinery gene
BSR20_RS09565 (BSR20_09670)	-	2056068..2056430 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16169.64 Da
• Isoelectric Point: 9.0226

>NTDB_id=206945 BSR20_RS09535 WP_014632542.1 2052668..2053105(-) (comYF) [Streptococcus salivarius strain ICDC3]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQESQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNKQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=206945 BSR20_RS09535 WP_014632542.1 2052668..2053105(-) (comYF) [Streptococcus salivarius strain ICDC3]
ATGTCTCTCAATAGTAAGGTTCGCGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAGCCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGTTGTCAGTTGGTAAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTAGCTTTTGGACTATCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTTAATGTAAAAGCTAGTACAATTAGCCAAAATAAACAGATAGTCACCATCCAAGTGACGCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae D39	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae R6	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	49.296	97.931	0.483
comGF/cglF	Streptococcus mitis SK321	46.528	99.31	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.528	99.31	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434