Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   BSR20_RS09555 Genome accession   NZ_CP018189
Coordinates   2054065..2055165 (-) Length   366 a.a.
NCBI ID   WP_156209968.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049065..2060165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09515 (BSR20_09620) - 2049674..2049871 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  BSR20_RS09520 (BSR20_09625) - 2050122..2051315 (-) 1194 WP_002885831.1 acetate kinase -
  BSR20_RS09525 (BSR20_09630) comYH 2051372..2052328 (-) 957 WP_014632544.1 class I SAM-dependent methyltransferase Machinery gene
  BSR20_RS09530 (BSR20_09635) comGG 2052373..2052690 (-) 318 WP_045001363.1 competence type IV pilus minor pilin ComGG -
  BSR20_RS09535 (BSR20_09640) comYF 2052668..2053105 (-) 438 WP_014632542.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR20_RS09540 (BSR20_09645) comGE 2053092..2053322 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  BSR20_RS09545 (BSR20_09650) comYD 2053354..2053782 (-) 429 WP_269434102.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR20_RS09550 (BSR20_09655) comYC 2053742..2054056 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR20_RS09555 (BSR20_09660) comYB 2054065..2055165 (-) 1101 WP_156209968.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR20_RS09560 (BSR20_09665) comYA 2055047..2055988 (-) 942 WP_045771803.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR20_RS09565 (BSR20_09670) - 2056068..2056430 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41714.88 Da        Isoelectric Point: 10.1740

>NTDB_id=206948 BSR20_RS09555 WP_156209968.1 2054065..2055165(-) (comYB) [Streptococcus salivarius strain ICDC3]
MPVKISKAIRQPAGTSSWKVWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFAAVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLVLIMLGFKN
YLLPQLLEGYGKENWTVQLVQIFPQLFFATLCGLLVLSLILYLWVKRQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=206948 BSR20_RS09555 WP_156209968.1 2054065..2055165(-) (comYB) [Streptococcus salivarius strain ICDC3]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAGCAGTTGGAAGGTTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTAAAGGTTATCCAGCTCTTCAAACAACTTCTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCCTTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGGCAGTGGGCTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGAAGTCTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCAACCTACCCTATTCTACTTCTGGGTTTCCTAGTTCTGATTATGTTGGGGTTCAAAAAT
TATCTTCTGCCTCAACTGTTAGAGGGGTATGGTAAGGAGAATTGGACCGTACAGTTGGTTCAGATCTTTCCCCAGCTCTT
TTTTGCGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTACCTATGGGTCAAACGCCAGCCAGCTCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTACTAGACTTAGTTGCTCTAATGAAAGAGCAAAAATCAAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCCAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

49.263

92.623

0.456
  comGB/cglB Streptococcus mitis SK321

48.521

92.35

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

48.225

92.35

0.445
  comGB/cglB Streptococcus pneumoniae D39

48.225

92.35

0.445
  comGB/cglB Streptococcus pneumoniae R6

48.225

92.35

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

48.225

92.35

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

43.465

89.891

0.391

Multiple sequence alignment