Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BSR20_RS09525 Genome accession   NZ_CP018189
Coordinates   2051372..2052328 (-) Length   318 a.a.
NCBI ID   WP_014632544.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2046372..2057328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09495 (BSR20_09600) proC 2046910..2047680 (+) 771 WP_045771801.1 pyrroline-5-carboxylate reductase -
  BSR20_RS09500 (BSR20_09605) - 2047707..2048369 (-) 663 WP_045771802.1 CPBP family intramembrane glutamic endopeptidase -
  BSR20_RS09505 (BSR20_09610) - 2048482..2048928 (-) 447 WP_045001368.1 hypothetical protein -
  BSR20_RS09510 (BSR20_09615) - 2049006..2049662 (-) 657 WP_014632546.1 CPBP family intramembrane glutamic endopeptidase -
  BSR20_RS09515 (BSR20_09620) - 2049674..2049871 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  BSR20_RS09520 (BSR20_09625) - 2050122..2051315 (-) 1194 WP_002885831.1 acetate kinase -
  BSR20_RS09525 (BSR20_09630) comYH 2051372..2052328 (-) 957 WP_014632544.1 class I SAM-dependent methyltransferase Machinery gene
  BSR20_RS09530 (BSR20_09635) comGG 2052373..2052690 (-) 318 WP_045001363.1 competence type IV pilus minor pilin ComGG -
  BSR20_RS09535 (BSR20_09640) comYF 2052668..2053105 (-) 438 WP_014632542.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR20_RS09540 (BSR20_09645) comGE 2053092..2053322 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  BSR20_RS09545 (BSR20_09650) comYD 2053354..2053782 (-) 429 WP_269434102.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR20_RS09550 (BSR20_09655) comYC 2053742..2054056 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR20_RS09555 (BSR20_09660) comYB 2054065..2055165 (-) 1101 WP_156209968.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR20_RS09560 (BSR20_09665) comYA 2055047..2055988 (-) 942 WP_045771803.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR20_RS09565 (BSR20_09670) - 2056068..2056430 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35773.65 Da        Isoelectric Point: 4.3805

>NTDB_id=206944 BSR20_RS09525 WP_014632544.1 2051372..2052328(-) (comYH) [Streptococcus salivarius strain ICDC3]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=206944 BSR20_RS09525 WP_014632544.1 2051372..2052328(-) (comYH) [Streptococcus salivarius strain ICDC3]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCCCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGCTATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTCGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment