Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CNQ49_RS17935 Genome accession   NZ_CP023383
Coordinates   3484611..3485348 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1223     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479611..3490348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ49_RS17920 (CNQ49_17920) clpC 3480065..3482638 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CNQ49_RS17925 (CNQ49_17925) yfiH 3482768..3483499 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CNQ49_RS17930 (CNQ49_17930) rluD 3483496..3484476 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNQ49_RS17935 (CNQ49_17935) comL 3484611..3485348 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CNQ49_RS17945 (CNQ49_17945) raiA 3485619..3485960 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CNQ49_RS26205 pheL 3486064..3486111 (+) 48 WP_010723158.1 phe operon leader peptide -
  CNQ49_RS17950 (CNQ49_17950) pheA 3486210..3487370 (+) 1161 WP_023281432.1 bifunctional chorismate mutase/prephenate dehydratase -
  CNQ49_RS17955 (CNQ49_17955) tyrA 3487413..3488534 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CNQ49_RS17960 (CNQ49_17960) aroF 3488545..3489615 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CNQ49_RS17965 (CNQ49_17965) yfiL 3489825..3490190 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=206729 CNQ49_RS17935 WP_000197686.1 3484611..3485348(+) (comL) [Escherichia coli strain 1223]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=206729 CNQ49_RS17935 WP_000197686.1 3484611..3485348(+) (comL) [Escherichia coli strain 1223]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment