Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CLC88_RS16165 Genome accession   NZ_CP023165
Coordinates   3152869..3153345 (+) Length   158 a.a.
NCBI ID   WP_001379208.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3147869..3158345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS16150 (CLC88_16530) agn43 3148010..3151131 (+) 3122 Protein_3075 autotransporter adhesin Ag43 -
  CLC88_RS16155 (CLC88_16540) - 3151458..3152276 (+) 819 WP_033801547.1 DUF932 domain-containing protein -
  CLC88_RS16160 (CLC88_16545) - 3152368..3152853 (+) 486 WP_000213718.1 antirestriction protein -
  CLC88_RS16165 (CLC88_16550) radC 3152869..3153345 (+) 477 WP_001379208.1 RadC family protein Machinery gene
  CLC88_RS16170 (CLC88_16555) - 3153408..3153647 (+) 240 WP_000692304.1 DUF987 domain-containing protein -
  CLC88_RS16175 (CLC88_16560) cbeA 3153705..3154073 (+) 369 WP_001285595.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CLC88_RS16180 (CLC88_16565) - 3154163..3154537 (+) 375 WP_000854716.1 TA system toxin CbtA family protein -
  CLC88_RS16185 (CLC88_16570) - 3154534..3155025 (+) 492 WP_000976843.1 DUF5983 family protein -
  CLC88_RS16190 (CLC88_16575) - 3155037..3155234 (+) 198 WP_000839249.1 DUF957 domain-containing protein -
  CLC88_RS16195 (CLC88_16580) - 3155319..3156164 (+) 846 WP_001280505.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17676.28 Da        Isoelectric Point: 6.6996

>NTDB_id=205462 CLC88_RS16165 WP_001379208.1 3152869..3153345(+) (radC) [Escherichia coli O22:H8 strain RM10809-3]
MQQLSFLPGEMTPGERSLILQALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIADETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205462 CLC88_RS16165 WP_001379208.1 3152869..3153345(+) (radC) [Escherichia coli O22:H8 strain RM10809-3]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCAGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGATGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment