Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GT3921_RS03085 Genome accession   NZ_CP018058
Coordinates   596323..596682 (+) Length   119 a.a.
NCBI ID   WP_011232661.1    Uniprot ID   U2WRT9
Organism   Geobacillus thermocatenulatus strain KCTC 3921     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 591323..601682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3921_RS03060 (GT3921_02960) - 591501..591935 (+) 435 WP_025039145.1 DUF1284 domain-containing protein -
  GT3921_RS03065 (GT3921_02965) - 592202..593578 (+) 1377 WP_025949163.1 aspartate kinase -
  GT3921_RS03070 (GT3921_02970) - 594021..594920 (+) 900 WP_025949162.1 processed acidic surface protein -
  GT3921_RS03075 (GT3921_02975) - 594927..595556 (+) 630 WP_025949161.1 class D sortase -
  GT3921_RS03080 (GT3921_02980) - 595614..596054 (-) 441 WP_025949160.1 YwpF-like family protein -
  GT3921_RS03085 (GT3921_02985) ssbB 596323..596682 (+) 360 WP_011232661.1 single-stranded DNA-binding protein Machinery gene
  GT3921_RS03090 (GT3921_02990) - 596804..597211 (-) 408 WP_025949159.1 helix-turn-helix transcriptional regulator -
  GT3921_RS03095 (GT3921_02995) - 597420..597929 (+) 510 WP_025949158.1 hypothetical protein -
  GT3921_RS03100 (GT3921_03000) - 598087..599442 (+) 1356 WP_025949157.1 peptidoglycan-binding protein -
  GT3921_RS03105 (GT3921_03005) - 599485..600264 (+) 780 WP_025949156.1 hypothetical protein -
  GT3921_RS19580 - 600637..601053 (+) 417 WP_244182592.1 hypothetical protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13427.38 Da        Isoelectric Point: 9.8293

>NTDB_id=205462 GT3921_RS03085 WP_011232661.1 596323..596682(+) (ssbB) [Geobacillus thermocatenulatus strain KCTC 3921]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=205462 GT3921_RS03085 WP_011232661.1 596323..596682(+) (ssbB) [Geobacillus thermocatenulatus strain KCTC 3921]
ATGCGCCAACACATGATCAATCAAGTCGTGTTGGTCGGCCGATTGACGAAAGACCCTGAGCTTCGCTATACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTTCGCAACGCGGAAGGAGGGATTGACGCCGATTTCGTTC
CGTGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGTTCGATGGTGGCGGTGACTGGGAGA
ATCCAGACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCTGGCAAGAAACCAGAATGGCCAGAGCACGTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2WRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.961

86.555

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

87.395

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

60

88.235

0.529
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.571

88.235

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.667

88.235

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

46.667

88.235

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae D39

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae R6

45.714

88.235

0.403
  ssbB/cilA Streptococcus mitis SK321

45.714

88.235

0.403
  ssbA Streptococcus mutans UA159

45.714

88.235

0.403
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37

Multiple sequence alignment