Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BMU11_RS02490 Genome accession   NZ_CP017938
Coordinates   522405..522836 (-) Length   143 a.a.
NCBI ID   WP_078219784.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517405..527836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02465 (BMU11_02385) - 517751..518134 (+) 384 WP_002116996.1 RidA family protein -
  BMU11_RS19870 - 518174..518251 (-) 78 Protein_462 hypothetical protein -
  BMU11_RS02470 (BMU11_02390) bfd 518354..518548 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  BMU11_RS02475 (BMU11_02395) bfr 518792..519256 (+) 465 WP_078219782.1 heteropolymeric bacterioferritin subunit Bfr -
  BMU11_RS02480 (BMU11_02400) - 519300..520927 (-) 1628 Protein_465 Wzy polymerase domain-containing protein -
  BMU11_RS02485 (BMU11_02405) - 521033..522346 (-) 1314 WP_078219783.1 O-antigen ligase family protein -
  BMU11_RS02490 (BMU11_02410) pilA 522405..522836 (-) 432 WP_078219784.1 pilin Machinery gene
  BMU11_RS02495 (BMU11_02415) - 523184..523744 (-) 561 WP_069124527.1 TPM domain-containing protein -
  BMU11_RS02500 (BMU11_02420) - 523738..524820 (-) 1083 WP_069124524.1 TPM domain-containing protein -
  BMU11_RS02505 (BMU11_02425) - 524845..525435 (-) 591 WP_002117090.1 LemA family protein -
  BMU11_RS02510 (BMU11_02430) - 525566..526453 (-) 888 WP_078219785.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14654.75 Da        Isoelectric Point: 5.0499

>NTDB_id=204259 BMU11_RS02490 WP_078219784.1 522405..522836(-) (pilA) [Acinetobacter pittii strain YMC2010/8/T346]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYSKYQAKSKLTASLSEISAGKTVAEERINNGEAVTLADLGLQATTSNCNIA
VTGFAAGSGDGTIECTVQNTPSQVTGAVMTWTRVGATGIWTCETTGITDADNKKLAPKGCAAS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=204259 BMU11_RS02490 WP_078219784.1 522405..522836(-) (pilA) [Acinetobacter pittii strain YMC2010/8/T346]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCAATTGCGAT
TCCACAGTATAGTAAGTATCAAGCAAAATCTAAATTAACGGCAAGTTTGTCTGAAATTTCAGCAGGTAAAACTGTAGCTG
AAGAGCGAATTAATAATGGGGAGGCAGTTACCCTAGCTGATCTTGGCCTTCAGGCAACTACATCAAATTGTAATATTGCT
GTAACTGGCTTTGCAGCAGGTAGTGGTGATGGAACTATTGAATGTACAGTTCAAAATACTCCTTCTCAAGTTACAGGTGC
CGTAATGACTTGGACAAGAGTTGGCGCAACTGGCATTTGGACTTGTGAAACTACAGGTATTACAGATGCAGATAATAAGA
AACTTGCTCCTAAAGGGTGTGCTGCGTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

48.276

100

0.49
  comP Acinetobacter baylyi ADP1

40.523

100

0.434
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.216

100

0.427
  pilA Vibrio cholerae strain A1552

41.216

100

0.427
  pilA Vibrio cholerae C6706

41.216

100

0.427
  pilA Pseudomonas aeruginosa PAK

38.71

100

0.42
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.531

89.51

0.399
  pilA Vibrio parahaemolyticus RIMD 2210633

44

87.413

0.385
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.732

99.301

0.385
  pilA2 Legionella pneumophila strain ERS1305867

42.857

88.112

0.378
  pilA2 Legionella pneumophila str. Paris

41.27

88.112

0.364

Multiple sequence alignment