Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K08M4_RS22140 Genome accession   NZ_CP017916
Coordinates   3122885..3123598 (+) Length   237 a.a.
NCBI ID   WP_198299300.1    Uniprot ID   -
Organism   Vibrio syngnathi strain K08M4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3117885..3128598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS14160 (K08M4_28270) - 3118910..3121240 (+) 2331 WP_086050257.1 Tex family protein -
  K08M4_RS14165 (K08M4_28280) - 3121367..3121840 (-) 474 WP_086050258.1 ATP-dependent Lon protease -
  K08M4_RS14170 (K08M4_28290) bioH 3122015..3122791 (-) 777 WP_086050259.1 pimeloyl-ACP methyl ester esterase BioH -
  K08M4_RS22140 (K08M4_28300) comF 3122885..3123598 (+) 714 WP_198299300.1 ComF family protein Machinery gene
  K08M4_RS14180 (K08M4_28310) nfuA 3123708..3124292 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  K08M4_RS14185 (K08M4_28320) nudE 3124605..3125156 (+) 552 WP_086050260.1 ADP compounds hydrolase NudE -
  K08M4_RS14190 (K08M4_28330) cysQ 3125193..3126020 (+) 828 WP_086050261.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K08M4_RS14195 (K08M4_28340) - 3126171..3126950 (-) 780 WP_086050262.1 type II secretion system protein N -
  K08M4_RS14200 (K08M4_28350) - 3126952..3127440 (-) 489 WP_086050263.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27223.51 Da        Isoelectric Point: 8.8831

>NTDB_id=204076 K08M4_RS22140 WP_198299300.1 3122885..3123598(+) (comF) [Vibrio syngnathi strain K08M4]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDAHPRWCDSCLNLFESVPRCQRCGLKTLLTIEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLTKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVEAEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGAIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=204076 K08M4_RS22140 WP_198299300.1 3122885..3123598(+) (comF) [Vibrio syngnathi strain K08M4]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCATCTGTGCAAGCTAGATAAGTCGCA
CAGTGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAATAGAGCAGTGCGGACAGTGTTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAT
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGACAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGTGTCCCTTTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACAGCTCAAGAACTTGGCGTTGAAGCTGAGGTGCTGTTCCGTCGAATTCGC
TCAACGGCTTCTCAGCAAGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAGCTATCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.932

99.578

0.557
  comF Vibrio campbellii strain DS40M4

50.82

100

0.523

Multiple sequence alignment