Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K08M4_RS16670 Genome accession   NZ_CP017917
Coordinates   397326..398420 (+) Length   364 a.a.
NCBI ID   WP_086050701.1    Uniprot ID   A0AA34TS85
Organism   Vibrio syngnathi strain K08M4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 392326..403420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS16645 (K08M4_33220) - 392584..395169 (+) 2586 WP_086051497.1 ATP-binding protein -
  K08M4_RS16650 (K08M4_33230) - 395271..395585 (-) 315 WP_004730049.1 DUF496 family protein -
  K08M4_RS16655 (K08M4_33240) - 395781..395981 (+) 201 WP_086050698.1 hypothetical protein -
  K08M4_RS16660 (K08M4_33250) - 396045..396701 (+) 657 WP_086050699.1 YceH family protein -
  K08M4_RS16665 (K08M4_33260) - 396702..397016 (+) 315 WP_086050700.1 GIY-YIG nuclease family protein -
  K08M4_RS16670 (K08M4_33270) luxP 397326..398420 (+) 1095 WP_086050701.1 substrate-binding domain-containing protein Regulator
  K08M4_RS16675 (K08M4_33280) luxQ 398420..400993 (+) 2574 WP_086050702.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K08M4_RS16680 (K08M4_33290) - 401138..401797 (-) 660 WP_086050703.1 PilZ domain-containing protein -
  K08M4_RS16685 (K08M4_33300) - 401991..402341 (+) 351 WP_086050704.1 HopJ type III effector protein -
  K08M4_RS16690 - 402477..402785 (-) 309 WP_086050705.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41181.47 Da        Isoelectric Point: 5.2927

>NTDB_id=204077 K08M4_RS16670 WP_086050701.1 397326..398420(+) (luxP) [Vibrio syngnathi strain K08M4]
MKRLLILLGVAVFSASALSHGTHVLNGYWEYQDYLTKFPEQKALTDKMVEAVQNPPMPLRQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRDNANPTQQSISLQEAIENKTDYLIFTLETTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHMTGSLKLANYFKKVSEPGSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSS
KESGYQAAKISLANDKDLNFIYACSTDVALGAAEAIRESGRDVLVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLEVPTVYSGEFEIVTKEDSPDRILELKQRAFRYSDQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=204077 K08M4_RS16670 WP_086050701.1 397326..398420(+) (luxP) [Vibrio syngnathi strain K08M4]
ATGAAACGTTTACTTATATTATTGGGAGTTGCCGTGTTTTCTGCGTCTGCTCTCTCCCACGGTACTCACGTCCTGAATGG
CTATTGGGAATATCAGGATTACCTCACTAAATTTCCAGAGCAAAAAGCATTGACCGATAAAATGGTTGAAGCTGTGCAAA
ATCCCCCTATGCCGTTGAGGCAAGTTCAGGATGAACCTATCACGATTTCAGTTGTGTACCCGGGGCAACAGATCTCCGAC
TATTGGGTTCGTAATATCCAAGCCTTTGAGAAACGCCTAGATAAATTGAGAATTAATTATCAAATAAATCAGGTTTTTAC
TCGTGACAATGCTAACCCCACTCAGCAGAGTATCTCTTTGCAAGAAGCGATTGAAAATAAAACGGATTATTTGATTTTTA
CGTTAGAGACGACGCGACACCGTAAGTTTATTGAACACGTGTTGAGCTCAACGGACACCAAATTGATTTTGCAAAATATT
ACCACGCCAGTACGTGCGTGGGCAGATAGGCAGCCGTTCATGTACGTGGGTTTCGACCATATGACGGGCAGTTTAAAGCT
AGCGAATTACTTCAAAAAAGTGAGTGAACCGGGCAGCAAGTATTCTGTGTTATATCGTTCTGAAGGTTATATTAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAATTCTGATACTAACTTTGCTCTTAAGTCGTCGTTTTACACAAAATCAAGT
AAAGAGAGCGGTTACCAAGCAGCTAAAATCAGCCTAGCTAACGATAAGGATCTAAACTTTATTTATGCATGCTCAACGGA
TGTTGCTCTGGGCGCAGCAGAAGCTATTCGAGAATCTGGTCGAGATGTCTTAGTGAATGGCTGGGGAGGCGGCTCTGCAG
AATTGGAAGCAATAGCAAGGGGCGACTTAGATGTTACGGTAATGCGGATGAATGATGATACGGGTATTGCGATGGCAGAG
GCGATCAAATGGGATCTTACCGGATTGGAAGTGCCTACTGTTTATTCAGGAGAGTTTGAAATTGTGACTAAAGAGGATTC
TCCAGATCGTATTTTAGAACTTAAGCAGCGAGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.228

100

0.629

Multiple sequence alignment