Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K08M4_RS14860 Genome accession   NZ_CP017916
Coordinates   3267057..3268580 (-) Length   507 a.a.
NCBI ID   WP_004735753.1    Uniprot ID   A0A7W4CAC5
Organism   Vibrio syngnathi strain K08M4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3262057..3273580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS14835 (K08M4_29600) - 3262085..3262348 (+) 264 WP_009848104.1 YihD family protein -
  K08M4_RS14840 (K08M4_29620) ccoG 3262675..3264093 (+) 1419 WP_086050345.1 cytochrome c oxidase accessory protein CcoG -
  K08M4_RS14845 (K08M4_29630) - 3264169..3265155 (+) 987 WP_086050346.1 serine/threonine protein kinase -
  K08M4_RS14850 (K08M4_29640) - 3265209..3265808 (+) 600 WP_086050347.1 thiol:disulfide interchange protein DsbA/DsbL -
  K08M4_RS14855 (K08M4_29650) - 3265948..3266901 (+) 954 WP_086050348.1 DUF2860 domain-containing protein -
  K08M4_RS14860 (K08M4_29660) comM 3267057..3268580 (-) 1524 WP_004735753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K08M4_RS14865 (K08M4_29670) ilvG 3269052..3270698 (+) 1647 WP_086050349.1 acetolactate synthase 2 catalytic subunit -
  K08M4_RS14870 (K08M4_29680) ilvM 3270700..3270984 (+) 285 WP_017073841.1 acetolactate synthase 2 small subunit -
  K08M4_RS14875 (K08M4_29690) - 3270997..3271965 (+) 969 WP_086050350.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55592.70 Da        Isoelectric Point: 7.6532

>NTDB_id=204073 K08M4_RS14860 WP_004735753.1 3267057..3268580(-) (comM) [Vibrio syngnathi strain K08M4]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=204073 K08M4_RS14860 WP_004735753.1 3267057..3268580(-) (comM) [Vibrio syngnathi strain K08M4]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCACCAGAAGTGACCGTGGAAGTGCATATTAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAATTTCCTTCGAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCCAAAGAGGGTGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAACTTCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAAC
GATGCTTAGTGGTTCCACACCACAATGGTGATCAGGCAGCCTTAGTCGGCAAGGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCGCTGGAGATCGCCGCAGCGGGCAACCATAACC
TGCTTTTTCTCGGCCCGCCCGGAACTGGAAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTGCCCGAAATGAGTGAC
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCTTTAACGCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCCGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATCATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
GAGCCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAATCGACTATCAG
GGCCGTTATTGGATAGGTTCGATATGTCGTTAGAGATCCCTCTGTTGCCTAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTTGAGACCGCACTGCATC
GATTAGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTGGCACGAACCATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCGGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment