Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BLD43_RS02985 Genome accession   NZ_CP017875
Coordinates   560184..561152 (-) Length   322 a.a.
NCBI ID   WP_002814836.1    Uniprot ID   -
Organism   Campylobacter coli strain ZV1224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555184..566152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS02965 (BLD43_02965) - 556699..557331 (-) 633 WP_002806260.1 membrane protein -
  BLD43_RS02970 (BLD43_02970) - 557497..558486 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  BLD43_RS02975 (BLD43_02975) - 558501..559256 (-) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  BLD43_RS02980 (BLD43_02980) - 559253..560191 (-) 939 WP_002785725.1 iron chelate uptake ABC transporter family permease subunit -
  BLD43_RS02985 (BLD43_02985) ceuB 560184..561152 (-) 969 WP_002814836.1 ABC transporter permease Machinery gene
  BLD43_RS02990 (BLD43_02990) - 561285..562178 (-) 894 WP_233347215.1 phospholipase A -
  BLD43_RS02995 (BLD43_02995) - 562277..562852 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  BLD43_RS03000 (BLD43_03000) - 562915..564222 (+) 1308 WP_002814838.1 NFACT family protein -
  BLD43_RS03005 (BLD43_03005) - 564225..564563 (+) 339 WP_002777761.1 hypothetical protein -
  BLD43_RS03010 (BLD43_03010) - 564572..565297 (+) 726 WP_002812238.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35549.41 Da        Isoelectric Point: 9.5069

>NTDB_id=203467 BLD43_RS02985 WP_002814836.1 560184..561152(-) (ceuB) [Campylobacter coli strain ZV1224]
MLFKHLFSLNILLILLVVFGIISLFIGIIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=203467 BLD43_RS02985 WP_002814836.1 560184..561152(-) (ceuB) [Campylobacter coli strain ZV1224]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GATTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

88.82

100

0.888

Multiple sequence alignment