Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   BLD43_RS03030 Genome accession   NZ_CP017875
Coordinates   568769..569284 (+) Length   171 a.a.
NCBI ID   WP_071315102.1    Uniprot ID   -
Organism   Campylobacter coli strain ZV1224     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563769..574284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS03005 (BLD43_03005) - 564225..564563 (+) 339 WP_002777761.1 hypothetical protein -
  BLD43_RS03010 (BLD43_03010) - 564572..565297 (+) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  BLD43_RS03015 (BLD43_03015) dxr 565294..566370 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  BLD43_RS03020 (BLD43_03020) - 566367..567761 (+) 1395 WP_071315101.1 M99 family carboxypeptidase catalytic domain-containing protein -
  BLD43_RS03025 (BLD43_03025) tsaD 567758..568765 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  BLD43_RS03030 (BLD43_03030) ctsG 568769..569284 (+) 516 WP_071315102.1 type II secretion system protein Machinery gene
  BLD43_RS03035 (BLD43_03035) - 569285..570526 (+) 1242 WP_071315103.1 DUF2920 family protein -
  BLD43_RS03040 (BLD43_03040) - 570538..572352 (+) 1815 WP_071315104.1 motility associated factor glycosyltransferase family protein -
  BLD43_RS03045 (BLD43_03045) - 572449..574189 (+) 1741 Protein_594 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18762.48 Da        Isoelectric Point: 6.4701

>NTDB_id=203468 BLD43_RS03030 WP_071315102.1 568769..569284(+) (ctsG) [Campylobacter coli strain ZV1224]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=203468 BLD43_RS03030 WP_071315102.1 568769..569284(+) (ctsG) [Campylobacter coli strain ZV1224]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGAGGAAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.176

99.415

0.906

Multiple sequence alignment