Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BS1321_RS13430 Genome accession   NZ_CP017704
Coordinates   2802491..2802853 (+) Length   120 a.a.
NCBI ID   WP_063235666.1    Uniprot ID   A0A223EHR0
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2797491..2807853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS13400 (BS1321_13195) - 2798270..2799109 (+) 840 WP_063235661.1 flagellar hook-basal body protein -
  BS1321_RS13405 (BS1321_13200) - 2799162..2800004 (+) 843 WP_063235662.1 flagellar hook-basal body protein -
  BS1321_RS13410 (BS1321_13205) - 2800173..2800427 (+) 255 WP_063235663.1 DNA-directed RNA polymerase subunit beta -
  BS1321_RS13415 (BS1321_13210) fabZ 2800555..2800983 (+) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BS1321_RS13420 (BS1321_13215) - 2801292..2801582 (+) 291 WP_063235664.1 hypothetical protein -
  BS1321_RS13425 (BS1321_13220) - 2801698..2802132 (-) 435 WP_063235665.1 YwpF family protein -
  BS1321_RS13430 (BS1321_13225) ssbB 2802491..2802853 (+) 363 WP_063235666.1 single-stranded DNA-binding protein Machinery gene
  BS1321_RS13435 (BS1321_13230) - 2803400..2804404 (+) 1005 WP_148358363.1 ABC transporter ATP-binding protein -
  BS1321_RS13440 (BS1321_13235) - 2804385..2805353 (+) 969 WP_063235668.1 ABC transporter ATP-binding protein -
  BS1321_RS13445 (BS1321_13240) - 2805396..2807012 (+) 1617 WP_063235669.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13647.55 Da        Isoelectric Point: 9.6262

>NTDB_id=202047 BS1321_RS13430 WP_063235666.1 2802491..2802853(+) (ssbB) [Peribacillus simplex NBRC 15720 = DSM 1321]
MINQVTLVGRLTKDPELRYTSDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQTDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=202047 BS1321_RS13430 WP_063235666.1 2802491..2802853(+) (ssbB) [Peribacillus simplex NBRC 15720 = DSM 1321]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCCGAATTAAGATACACATCCGATGGCAAGGCTGTTTC
CAATATCACGTTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAGGTGGTCGCCGAGAGAGTTCAATTCATTGGGTCTAAACA
AACTGATGTTAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223EHR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

57.407

90

0.517
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367
  ssbB Lactococcus lactis subsp. cremoris KW2

41.121

89.167

0.367

Multiple sequence alignment