Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GD3902_RS10765 Genome accession   NZ_CP017694
Coordinates   2157997..2158344 (+) Length   115 a.a.
NCBI ID   WP_008880386.1    Uniprot ID   A4IT00
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2152997..2163344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS10740 (GD3902_10520) - 2153369..2153803 (+) 435 WP_008880391.1 DUF1284 domain-containing protein -
  GD3902_RS10745 (GD3902_10525) - 2153954..2155330 (+) 1377 WP_011888254.1 aspartate kinase -
  GD3902_RS10750 (GD3902_10530) - 2155440..2156408 (+) 969 WP_051358531.1 processed acidic surface protein -
  GD3902_RS10755 (GD3902_10535) - 2156415..2157086 (+) 672 WP_029761385.1 class D sortase -
  GD3902_RS10760 (GD3902_10540) - 2157273..2157713 (-) 441 WP_011888252.1 YwpF-like family protein -
  GD3902_RS10765 (GD3902_10545) ssbB 2157997..2158344 (+) 348 WP_008880386.1 single-stranded DNA-binding protein Machinery gene
  GD3902_RS10770 (GD3902_10550) - 2158474..2158884 (-) 411 WP_029761384.1 helix-turn-helix domain-containing protein -
  GD3902_RS10775 (GD3902_10555) - 2159098..2159598 (+) 501 WP_029761383.1 hypothetical protein -
  GD3902_RS18810 (GD3902_10560) - 2159909..2161138 (+) 1230 Protein_2068 peptidoglycan-binding domain-containing protein -
  GD3902_RS18815 - 2161274..2161792 (+) 519 Protein_2069 NlpC/P60 family protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12957.77 Da        Isoelectric Point: 8.5040

>NTDB_id=201893 GD3902_RS10765 WP_008880386.1 2157997..2158344(+) (ssbB) [Geobacillus thermodenitrificans strain KCTC3902]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=201893 GD3902_RS10765 WP_008880386.1 2157997..2158344(+) (ssbB) [Geobacillus thermodenitrificans strain KCTC3902]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

95.652

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

90.435

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

91.304

0.557
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

99.13

0.47
  ssbA Streptococcus mutans UA159

44.737

99.13

0.443
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  ssbB/cilA Streptococcus mitis SK321

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.982

99.13

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

90.435

0.374

Multiple sequence alignment