Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GTID1_RS11950 Genome accession   NZ_CP017690
Coordinates   2415314..2415661 (+) Length   115 a.a.
NCBI ID   WP_008880386.1    Uniprot ID   A4IT00
Organism   Geobacillus thermodenitrificans strain ID-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2410314..2420661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTID1_RS11925 (GTID1_11660) - 2410686..2411120 (+) 435 WP_008880391.1 DUF1284 domain-containing protein -
  GTID1_RS11930 (GTID1_11665) - 2411271..2412647 (+) 1377 WP_081157467.1 aspartate kinase -
  GTID1_RS11935 (GTID1_11670) - 2412757..2413725 (+) 969 WP_081157468.1 processed acidic surface protein -
  GTID1_RS11940 (GTID1_11675) - 2413732..2414403 (+) 672 WP_099233129.1 class D sortase -
  GTID1_RS11945 (GTID1_11680) - 2414590..2415030 (-) 441 WP_008880387.1 YwpF-like family protein -
  GTID1_RS11950 (GTID1_11685) ssbB 2415314..2415661 (+) 348 WP_008880386.1 single-stranded DNA-binding protein Machinery gene
  GTID1_RS11955 (GTID1_11690) - 2415791..2416201 (-) 411 WP_029761384.1 helix-turn-helix domain-containing protein -
  GTID1_RS11960 (GTID1_11695) - 2416415..2416915 (+) 501 WP_008880384.1 hypothetical protein -
  GTID1_RS20025 - 2417324..2417704 (+) 381 Protein_2312 peptidoglycan-binding domain-containing protein -
  GTID1_RS11965 (GTID1_11700) - 2417771..2419108 (+) 1338 Protein_2313 peptidoglycan-binding protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12957.77 Da        Isoelectric Point: 8.5040

>NTDB_id=201844 GTID1_RS11950 WP_008880386.1 2415314..2415661(+) (ssbB) [Geobacillus thermodenitrificans strain ID-1]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=201844 GTID1_RS11950 WP_008880386.1 2415314..2415661(+) (ssbB) [Geobacillus thermodenitrificans strain ID-1]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

95.652

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

90.435

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

91.304

0.557
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

99.13

0.47
  ssbA Streptococcus mutans UA159

44.737

99.13

0.443
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  ssbB/cilA Streptococcus mitis SK321

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.982

99.13

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

90.435

0.374

Multiple sequence alignment