Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | BKN48_RS07525 | Genome accession | NZ_CP017676 |
| Coordinates | 1424546..1424887 (-) | Length | 113 a.a. |
| NCBI ID | WP_070547929.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain VV2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1419546..1429887
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKN48_RS07510 (BKN48_07510) | hepAB | 1419788..1422556 (+) | 2769 | WP_070547926.1 | DEAD/DEAH box helicase | - |
| BKN48_RS07515 (BKN48_07515) | ywpJ | 1422682..1423539 (-) | 858 | WP_070547927.1 | phosphatase YwpJ | - |
| BKN48_RS07520 (BKN48_07520) | glcR | 1423545..1424321 (-) | 777 | WP_021480781.1 | transcriptional regulator GlcR | - |
| BKN48_RS07525 (BKN48_07525) | ssbB | 1424546..1424887 (-) | 342 | WP_070547929.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| BKN48_RS07530 (BKN48_07530) | ywpG | 1424964..1425347 (-) | 384 | WP_003227796.1 | DynA interaction protein YwpG | - |
| BKN48_RS07535 (BKN48_07535) | ywpF | 1425522..1425932 (+) | 411 | WP_003227794.1 | YwpF-like family protein | - |
| BKN48_RS07540 (BKN48_07540) | - | 1426059..1426697 (-) | 639 | WP_064671492.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12474.16 Da Isoelectric Point: 7.8150
>NTDB_id=201491 BKN48_RS07525 WP_070547929.1 1424546..1424887(-) (ssbB) [Bacillus subtilis strain VV2]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKIAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKIAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=201491 BKN48_RS07525 WP_070547929.1 1424546..1424887(-) (ssbB) [Bacillus subtilis strain VV2]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTTAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAATAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACAGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTTAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAATAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACAGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
98.23 |
100 |
0.982 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
93.805 |
0.602 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.434 |
93.805 |
0.558 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.519 |
95.575 |
0.416 |
| ssbA | Streptococcus mutans UA159 |
44.34 |
93.805 |
0.416 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.905 |
92.92 |
0.389 |