Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BKM66_RS00840 Genome accession   NZ_CP017666
Coordinates   133924..134319 (+) Length   131 a.a.
NCBI ID   WP_044754805.1    Uniprot ID   A0A0Z8MGQ4
Organism   Streptococcus suis strain 0061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128924..139319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS00810 (BKM66_00805) pepA 129610..130674 (-) 1065 WP_162636981.1 glutamyl aminopeptidase -
  BKM66_RS00815 (BKM66_00810) - 130818..131102 (+) 285 WP_105183751.1 DUF4651 domain-containing protein -
  BKM66_RS00820 (BKM66_00815) - 131099..131419 (+) 321 WP_105143421.1 thioredoxin family protein -
  BKM66_RS00825 (BKM66_00820) - 131463..132419 (+) 957 WP_105183752.1 DUF1002 domain-containing protein -
  BKM66_RS00830 (BKM66_00825) ytpR 132438..133061 (+) 624 WP_105183753.1 YtpR family tRNA-binding protein -
  BKM66_RS00835 (BKM66_00830) - 133093..133869 (-) 777 WP_105183754.1 DUF2785 domain-containing protein -
  BKM66_RS00840 (BKM66_00835) ssbA 133924..134319 (+) 396 WP_044754805.1 single-stranded DNA-binding protein Machinery gene
  BKM66_RS10315 (BKM66_00840) - 134433..134678 (-) 246 WP_162636960.1 hypothetical protein -
  BKM66_RS00850 (BKM66_00845) groES 134876..135157 (+) 282 WP_014637330.1 co-chaperone GroES -
  BKM66_RS00855 (BKM66_00850) groL 135168..136790 (+) 1623 WP_024393522.1 chaperonin GroEL -
  BKM66_RS00860 (BKM66_00855) rpsL 137021..137434 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  BKM66_RS00865 (BKM66_00860) rpsG 137451..137921 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14881.73 Da        Isoelectric Point: 5.0026

>NTDB_id=201290 BKM66_RS00840 WP_044754805.1 133924..134319(+) (ssbA) [Streptococcus suis strain 0061]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISVDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=201290 BKM66_RS00840 WP_044754805.1 133924..134319(+) (ssbA) [Streptococcus suis strain 0061]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATTTGAC
TCGTGTAACCATTGCAGTTAATAGACGATTTAAGACAGAAAATGGCGAACGTGAAGCGGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCCTATGGCAGCAAGGGCAGTCTGATTTCTGTTGATGGTGAATTGCGAACCCGA
AAATACGAAAAAGATGGCAGCAACCACTATGTGACGGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAACAATACTGGCGATGATCTGGCTGATTTGGTTTTGGAAGAGGAGGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8MGQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

65.179

85.496

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment