Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SSU05_0129 Genome accession   CP000407
Coordinates   121890..122297 (+) Length   135 a.a.
NCBI ID   ABP89099.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116890..127297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0123 - 118274..118663 (+) 390 ABP89093.1 Uncharacterized protein conserved in bacteria -
  SSU05_0124 - 118698..118934 (-) 237 ABP89094.1 Uncharacterized protein -
  SSU05_0125 - 119024..119653 (-) 630 ABP89095.1 Uncharacterized protein -
  SSU05_0126 comGA 119727..120677 (+) 951 ABP89096.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Machinery gene
  SSU05_0127 comGB 120589..121626 (+) 1038 ABP89097.1 Type II secretory pathway, component PulF Machinery gene
  SSU05_0128 comGC 121628..121909 (+) 282 ABP89098.1 Competence protein ComGC Machinery gene
  SSU05_0129 comGD 121890..122297 (+) 408 ABP89099.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0130 comGE 122269..122562 (+) 294 ABP89100.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0131 comGF/cglF 122549..122971 (+) 423 ABP89101.1 Competence protein ComGF Machinery gene
  SSU05_0132 comGG 122962..123372 (+) 411 ABP89102.1 hypothetical protein Machinery gene
  SSU05_0133 comGH 123430..124404 (+) 975 ABP89104.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0134 comGH 124202..124384 (+) 183 ABP89103.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0135 - 124434..125621 (+) 1188 ABP89105.1 acetate kinase -
  SSU05_0136 - 125744..126487 (+) 744 ABP89106.1 unknown protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15367.59 Da        Isoelectric Point: 8.3926

>NTDB_id=20122 SSU05_0129 ABP89099.1 121890..122297(+) (comGD) [Streptococcus suis 05ZYH33]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHKKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEEDGGNSSLTKIRFHLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=20122 SSU05_0129 ABP89099.1 121890..122297(+) (comGD) [Streptococcus suis 05ZYH33]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTAGCAGCCAGTTCCCACAAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTCTTAGAGGAGAAAACTATTCAGTTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCACCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

43.411

95.556

0.415
  comGD Lactococcus lactis subsp. cremoris KW2

39.062

94.815

0.37

Multiple sequence alignment