Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CEK59_RS26285 Genome accession   NZ_CP022478
Coordinates   5544095..5545183 (+) Length   362 a.a.
NCBI ID   WP_058159879.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LW     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5539095..5550183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS26265 (CEK59_26155) rsmB 5539990..5541294 (-) 1305 WP_058159872.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CEK59_RS26270 (CEK59_26160) fmt 5541291..5542235 (-) 945 WP_058159874.1 methionyl-tRNA formyltransferase -
  CEK59_RS26275 (CEK59_26165) def 5542290..5542796 (-) 507 WP_003097293.1 peptide deformylase -
  CEK59_RS26280 (CEK59_26170) tsaP 5542935..5543960 (+) 1026 WP_058159876.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CEK59_RS26285 (CEK59_26175) dprA 5544095..5545183 (+) 1089 WP_058159879.1 DNA-processing protein DprA Machinery gene
  CEK59_RS26290 (CEK59_26180) - 5545224..5545781 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  CEK59_RS26295 (CEK59_26185) - 5545791..5546768 (-) 978 WP_058159881.1 NADPH:quinone reductase -
  CEK59_RS26300 (CEK59_26190) hemF 5546959..5547876 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  CEK59_RS26305 (CEK59_26195) aroE 5547934..5548758 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  CEK59_RS26310 (CEK59_26200) - 5548869..5549855 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37662.19 Da        Isoelectric Point: 7.0288

>NTDB_id=201153 CEK59_RS26285 WP_058159879.1 5544095..5545183(+) (dprA) [Pseudomonas aeruginosa strain LW]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGAARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=201153 CEK59_RS26285 WP_058159879.1 5544095..5545183(+) (dprA) [Pseudomonas aeruginosa strain LW]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCTCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCG
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCTGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Acinetobacter baumannii D1279779

38.462

100

0.387
  dprA Acinetobacter baumannii strain A118

39.093

97.514

0.381
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367

Multiple sequence alignment