Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BJD94_RS15280 | Genome accession | NZ_CP017635 |
| Coordinates | 3020717..3021142 (-) | Length | 141 a.a. |
| NCBI ID | WP_038964707.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus Env1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3015717..3026142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD94_RS15260 (BJD94_13965) | coaE | 3016177..3016785 (-) | 609 | WP_038964346.1 | dephospho-CoA kinase | - |
| BJD94_RS15265 (BJD94_13970) | pilD | 3016787..3017656 (-) | 870 | WP_080526796.1 | A24 family peptidase | Machinery gene |
| BJD94_RS15270 (BJD94_13975) | pilC | 3017750..3018976 (-) | 1227 | WP_038964709.1 | type II secretion system F family protein | Machinery gene |
| BJD94_RS15275 (BJD94_13980) | pilB | 3019024..3020712 (-) | 1689 | WP_038964708.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BJD94_RS15280 (BJD94_13985) | pilA | 3020717..3021142 (-) | 426 | WP_038964707.1 | pilin | Machinery gene |
| BJD94_RS15285 (BJD94_13990) | nadC | 3021365..3022252 (-) | 888 | WP_017421195.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BJD94_RS15290 (BJD94_13995) | ampD | 3022345..3022917 (+) | 573 | WP_103154530.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BJD94_RS15295 (BJD94_14000) | pdhR | 3023306..3024073 (+) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14727.93 Da Isoelectric Point: 9.4543
>NTDB_id=200839 BJD94_RS15280 WP_038964707.1 3020717..3021142(-) (pilA) [Vibrio vulnificus Env1]
MKKLHKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
MKKLHKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
Nucleotide
Download Length: 426 bp
>NTDB_id=200839 BJD94_RS15280 WP_038964707.1 3020717..3021142(-) (pilA) [Vibrio vulnificus Env1]
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACTGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTGGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGCGATATTAAATTTAGTTTCAACTCATCAGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACGTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCGA
CAGATCTAAAACCTAAAGGCTGTTAA
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACTGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTGGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGCGATATTAAATTTAGTTTCAACTCATCAGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACGTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCGA
CAGATCTAAAACCTAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae C6706 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.358 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
43.537 |
100 |
0.454 |
| pilA | Acinetobacter baumannii strain A118 |
43.704 |
95.745 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.143 |
99.291 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.537 |
95.035 |
0.404 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.416 |
97.163 |
0.383 |