Detailed information NTG0200836

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BJD94_RS15265
• Genome accession: NZ_CP017635
• Coordinates: 3016787..3017656 (-)
• Length: 289 a.a.
• NCBI ID: WP_080526796.1
• Uniprot ID: -
• Organism: Vibrio vulnificus Env1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3011787..3022656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD94_RS15230 (BJD94_13935)	rpsP	3012931..3013179 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
BJD94_RS15235 (BJD94_13940)	rimM	3013195..3013743 (+)	549	WP_038941427.1	ribosome maturation factor RimM	-
BJD94_RS15240 (BJD94_13945)	trmD	3013771..3014520 (+)	750	WP_038964347.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BJD94_RS15245 (BJD94_13950)	rplS	3014562..3014915 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
BJD94_RS15250 (BJD94_13955)	yacG	3015147..3015341 (-)	195	WP_038941426.1	DNA gyrase inhibitor YacG	-
BJD94_RS15255 (BJD94_13960)	zapD	3015404..3016144 (-)	741	WP_017421189.1	cell division protein ZapD	-
BJD94_RS15260 (BJD94_13965)	coaE	3016177..3016785 (-)	609	WP_038964346.1	dephospho-CoA kinase	-
BJD94_RS15265 (BJD94_13970)	pilD	3016787..3017656 (-)	870	WP_080526796.1	A24 family peptidase	Machinery gene
BJD94_RS15270 (BJD94_13975)	pilC	3017750..3018976 (-)	1227	WP_038964709.1	type II secretion system F family protein	Machinery gene
BJD94_RS15275 (BJD94_13980)	pilB	3019024..3020712 (-)	1689	WP_038964708.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BJD94_RS15280 (BJD94_13985)	pilA	3020717..3021142 (-)	426	WP_038964707.1	pilin	Machinery gene
BJD94_RS15285 (BJD94_13990)	nadC	3021365..3022252 (-)	888	WP_017421195.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32211.31 Da
• Isoelectric Point: 6.8198

>NTDB_id=200836 BJD94_RS15265 WP_080526796.1 3016787..3017656(-) (pilD) [Vibrio vulnificus Env1]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGLTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSIVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=200836 BJD94_RS15265 WP_080526796.1 3016787..3017656(-) (pilD) [Vibrio vulnificus Env1]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGGCTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGTTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGATTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATTTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.817	100	0.768
pilD	Vibrio cholerae strain A1552	70.833	99.654	0.706
pilD	Acinetobacter nosocomialis M2	54.71	95.502	0.522
pilD	Acinetobacter baumannii D1279779	54.71	95.502	0.522
pilD	Neisseria gonorrhoeae MS11	48.364	95.156	0.46