Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJD94_RS15270 Genome accession   NZ_CP017635
Coordinates   3017750..3018976 (-) Length   408 a.a.
NCBI ID   WP_038964709.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3012750..3023976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS15230 (BJD94_13935) rpsP 3012931..3013179 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  BJD94_RS15235 (BJD94_13940) rimM 3013195..3013743 (+) 549 WP_038941427.1 ribosome maturation factor RimM -
  BJD94_RS15240 (BJD94_13945) trmD 3013771..3014520 (+) 750 WP_038964347.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BJD94_RS15245 (BJD94_13950) rplS 3014562..3014915 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  BJD94_RS15250 (BJD94_13955) yacG 3015147..3015341 (-) 195 WP_038941426.1 DNA gyrase inhibitor YacG -
  BJD94_RS15255 (BJD94_13960) zapD 3015404..3016144 (-) 741 WP_017421189.1 cell division protein ZapD -
  BJD94_RS15260 (BJD94_13965) coaE 3016177..3016785 (-) 609 WP_038964346.1 dephospho-CoA kinase -
  BJD94_RS15265 (BJD94_13970) pilD 3016787..3017656 (-) 870 WP_080526796.1 A24 family peptidase Machinery gene
  BJD94_RS15270 (BJD94_13975) pilC 3017750..3018976 (-) 1227 WP_038964709.1 type II secretion system F family protein Machinery gene
  BJD94_RS15275 (BJD94_13980) pilB 3019024..3020712 (-) 1689 WP_038964708.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD94_RS15280 (BJD94_13985) pilA 3020717..3021142 (-) 426 WP_038964707.1 pilin Machinery gene
  BJD94_RS15285 (BJD94_13990) nadC 3021365..3022252 (-) 888 WP_017421195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BJD94_RS15290 (BJD94_13995) ampD 3022345..3022917 (+) 573 WP_103154530.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45256.58 Da        Isoelectric Point: 10.3569

>NTDB_id=200837 BJD94_RS15270 WP_038964709.1 3017750..3018976(-) (pilC) [Vibrio vulnificus Env1]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKIKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVVKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSTIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=200837 BJD94_RS15270 WP_038964709.1 3017750..3018976(-) (pilC) [Vibrio vulnificus Env1]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAGATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAATCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGGTCAAGGCATTGATTTATCCCTGCATGGTCGTGCTCGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAATTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCACCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCAGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACCTGCCGATC
TTTAATTTAATGAGCGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

77.75

98.039

0.762
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Legionella pneumophila strain ERS1305867

40.347

99.02

0.4
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Acinetobacter baylyi ADP1

40.351

97.794

0.395

Multiple sequence alignment