Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BIZ52_RS03225 Genome accession   NZ_CP017457
Coordinates   673824..675335 (-) Length   503 a.a.
NCBI ID   WP_027228406.1    Uniprot ID   A0A2S6F489
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 668824..680335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS03190 (BIZ52_03130) - 668929..669600 (-) 672 WP_027228401.1 TIGR00153 family protein -
  BIZ52_RS03195 (BIZ52_03135) - 669792..670556 (+) 765 WP_027228402.1 type II/III secretion system protein -
  BIZ52_RS03200 (BIZ52_03140) - 670744..671307 (+) 564 WP_027223636.1 YqgE/AlgH family protein -
  BIZ52_RS03205 (BIZ52_03145) ruvX 671300..671719 (+) 420 WP_027228403.1 Holliday junction resolvase RuvX -
  BIZ52_RS03210 (BIZ52_03150) - 671769..672662 (+) 894 WP_027228404.1 aspartate carbamoyltransferase catalytic subunit -
  BIZ52_RS03215 (BIZ52_03155) - 672718..673104 (-) 387 WP_063720024.1 hypothetical protein -
  BIZ52_RS03220 (BIZ52_03160) - 673333..673719 (-) 387 WP_011945755.1 hypothetical protein -
  BIZ52_RS03225 (BIZ52_03165) comM 673824..675335 (-) 1512 WP_027228406.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BIZ52_RS03230 (BIZ52_03170) - 675400..675654 (-) 255 WP_027228407.1 ubiquinone biosynthesis accessory factor UbiK -
  BIZ52_RS03235 (BIZ52_03175) - 675799..676137 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  BIZ52_RS03240 (BIZ52_03180) - 676147..676728 (-) 582 WP_027228408.1 5-formyltetrahydrofolate cyclo-ligase -
  BIZ52_RS03245 (BIZ52_03185) - 676975..677160 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  BIZ52_RS03250 (BIZ52_03190) - 677174..677992 (+) 819 WP_027228409.1 aminotransferase class IV -
  BIZ52_RS03255 (BIZ52_03195) - 678016..678699 (-) 684 WP_050598247.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55076.69 Da        Isoelectric Point: 8.0904

>NTDB_id=198352 BIZ52_RS03225 WP_027228406.1 673824..675335(-) (comM) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MNLAFTKTRSTIGIIAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLAHHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANSL
REVCDYLCQGTPLQNLPRKPDLALNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMARRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRINRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMNE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=198352 BIZ52_RS03225 WP_027228406.1 673824..675335(-) (comM) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGAATCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTATCGCACAACCCGTATCTGTCGAAGTCCATTTATCAAA
TGGCTTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACCGCAGTGAAAGAAAGTAAAGACAGAGTACGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGTCGCAAAATTACTGTTAATCTTGGTCCTGCCAATTTACCTAAAACGGGAAGTGGT
TTTGACTTGCCTATTGCATTAGGAATACTCGCAGCATCAGAACAAATTCCTCTTACCAATCTTGCGCATCACGAATTTAT
TGGAGAATTGGCTTTAAGTGGCGAGCTTAGAGGAGTCTCTGCCATTATTCCTGCTGTTCTTGCAGCACATAAAGACAATC
AACATCTGATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGACATCCAAAAGTCTTTACTGCCAATAGCTTA
CGCGAAGTTTGCGATTATCTATGCCAAGGTACTCCCTTACAGAACTTACCCCGCAAGCCAGATCTTGCCTTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGTA
TTCTGCTAAGTGGTGCCCCAGGCAGTGGAAAAACGATGATGGCAAGAAGATTTAGCACCTTGTTACCCGAGTTATCGGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCGCATCATACTGCCTCACCTGTGGCGTTAGTCGGAGGAGGCAACCCACCGAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTAGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATCGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAACCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACCATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAATGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6F489

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

96.024

100

0.96
  comM Legionella pneumophila strain ERS1305867

96.024

100

0.96
  comM Haemophilus influenzae Rd KW20

50.394

100

0.509
  comM Vibrio cholerae strain A1552

50.497

100

0.505
  comM Vibrio campbellii strain DS40M4

49.703

100

0.499
  comM Glaesserella parasuis strain SC1401

47.535

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.968

99.006

0.416

Multiple sequence alignment