Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   XCCCN03_RS05345 Genome accession   NZ_CP017308
Coordinates   1221764..1222174 (+) Length   136 a.a.
NCBI ID   WP_129588890.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris str. CN03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1205118..1231264 1221764..1222174 within 0


Gene organization within MGE regions


Location: 1205118..1231264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN03_RS23205 - 1205779..1206009 (-) 231 WP_165349436.1 hypothetical protein -
  XCCCN03_RS05275 - 1206073..1206228 (+) 156 WP_129588884.1 hypothetical protein -
  XCCCN03_RS05280 - 1206405..1206800 (+) 396 WP_016945003.1 hypothetical protein -
  XCCCN03_RS05285 - 1206891..1207283 (+) 393 WP_129588885.1 H-NS family nucleoid-associated regulatory protein -
  XCCCN03_RS05295 glgX 1207818..1209947 (-) 2130 WP_129588886.1 glycogen debranching protein GlgX -
  XCCCN03_RS05300 rimK 1210440..1211315 (+) 876 WP_011038222.1 30S ribosomal protein S6--L-glutamate ligase -
  XCCCN03_RS05305 - 1211965..1212642 (+) 678 WP_003490678.1 response regulator transcription factor -
  XCCCN03_RS05310 - 1212635..1213969 (+) 1335 WP_165349437.1 HAMP domain-containing sensor histidine kinase -
  XCCCN03_RS05315 - 1214112..1214387 (-) 276 WP_230433394.1 GNAT family N-acetyltransferase -
  XCCCN03_RS05320 - 1214435..1215543 (+) 1109 WP_129588887.1 IS3 family transposase -
  XCCCN03_RS05325 - 1215545..1218499 (-) 2955 WP_242505138.1 DUF6531 domain-containing protein -
  XCCCN03_RS05330 coaE 1218644..1219264 (-) 621 WP_129588888.1 dephospho-CoA kinase -
  XCCCN03_RS05335 - 1219278..1220141 (-) 864 WP_129588889.1 A24 family peptidase -
  XCCCN03_RS05340 pilC 1220148..1221404 (-) 1257 WP_129589289.1 type II secretion system F family protein Machinery gene
  XCCCN03_RS05345 pilA/pilAI 1221764..1222174 (+) 411 WP_129588890.1 pilin Machinery gene
  XCCCN03_RS05350 pilA/pilAI 1222249..1222656 (+) 408 WP_129588891.1 pilin Machinery gene
  XCCCN03_RS05355 pilB 1222777..1224510 (+) 1734 WP_129588892.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCCCN03_RS05360 pilR 1224928..1226322 (-) 1395 WP_165349438.1 sigma-54 dependent transcriptional regulator Regulator
  XCCCN03_RS05365 - 1226531..1228141 (-) 1611 WP_012437608.1 HAMP domain-containing sensor histidine kinase -
  XCCCN03_RS05370 sucC 1228375..1229544 (+) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  XCCCN03_RS05375 sucD 1229569..1230444 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  XCCCN03_RS05380 - 1230548..1230958 (+) 411 WP_029628876.1 DNA-binding protein -
  XCCCN03_RS05385 - 1230962..1231264 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14050.39 Da        Isoelectric Point: 8.4937

>NTDB_id=197532 XCCCN03_RS05345 WP_129588890.1 1221764..1222174(+) (pilA/pilAI) [Xanthomonas campestris pv. campestris str. CN03]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTTVTGIGDLGLKSPTERCT
ISPITALSATGTIVCTLKGNTQVVGKTVTLTRATDGTWTCATNAAAKHAPAGCPSV

Nucleotide


Download         Length: 411 bp        

>NTDB_id=197532 XCCCN03_RS05345 WP_129588890.1 1221764..1222174(+) (pilA/pilAI) [Xanthomonas campestris pv. campestris str. CN03]
ATGAAGAAGCAGAACGGTTTTACGCTGATCGAACTGATGATTGTTATTGCGATCATTGCAATCCTGGCCGCCATCGCGCT
CCCGATGTACCAGGACTACGTCGCCAAGTCGCAGGTGACTGCGGGCCTGGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTTGCACTGAACGAAGGCAAGACCACGGTCACCGGCATCGGCGATCTCGGCCTGAAGTCGCCGACCGAGCGCTGCACC
ATCAGCCCCATCACTGCACTGAGCGCCACCGGCACCATCGTCTGCACGCTCAAGGGCAACACCCAGGTTGTCGGTAAGAC
CGTCACCCTGACCCGTGCTACTGATGGCACGTGGACCTGCGCGACCAATGCTGCTGCCAAGCATGCGCCAGCAGGCTGCC
CGAGCGTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

53.333

99.265

0.529
  pilA Acinetobacter baumannii strain A118

51.825

100

0.522
  pilA Pseudomonas aeruginosa PAK

41.892

100

0.456
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.776

98.529

0.441
  pilA2 Legionella pneumophila str. Paris

41.429

100

0.426
  pilA Vibrio cholerae C6706

40.426

100

0.419
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.426

100

0.419
  pilA Vibrio cholerae strain A1552

40.426

100

0.419
  pilA2 Legionella pneumophila strain ERS1305867

40.714

100

0.419
  comP Acinetobacter baylyi ADP1

37.415

100

0.404

Multiple sequence alignment