Detailed information NTG0197531

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: XCCCN03_RS05340
• Genome accession: NZ_CP017308
• Coordinates: 1220148..1221404 (-)
• Length: 418 a.a.
• NCBI ID: WP_129589289.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris str. CN03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1205118..1231264	1220148..1221404	within	0

Gene organization within MGE regions

Location: 1205118..1231264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XCCCN03_RS23205	-	1205779..1206009 (-)	231	WP_165349436.1	hypothetical protein	-
XCCCN03_RS05275	-	1206073..1206228 (+)	156	WP_129588884.1	hypothetical protein	-
XCCCN03_RS05280	-	1206405..1206800 (+)	396	WP_016945003.1	hypothetical protein	-
XCCCN03_RS05285	-	1206891..1207283 (+)	393	WP_129588885.1	H-NS family nucleoid-associated regulatory protein	-
XCCCN03_RS05295	glgX	1207818..1209947 (-)	2130	WP_129588886.1	glycogen debranching protein GlgX	-
XCCCN03_RS05300	rimK	1210440..1211315 (+)	876	WP_011038222.1	30S ribosomal protein S6--L-glutamate ligase	-
XCCCN03_RS05305	-	1211965..1212642 (+)	678	WP_003490678.1	response regulator transcription factor	-
XCCCN03_RS05310	-	1212635..1213969 (+)	1335	WP_165349437.1	HAMP domain-containing sensor histidine kinase	-
XCCCN03_RS05315	-	1214112..1214387 (-)	276	WP_230433394.1	GNAT family N-acetyltransferase	-
XCCCN03_RS05320	-	1214435..1215543 (+)	1109	WP_129588887.1	IS3 family transposase	-
XCCCN03_RS05325	-	1215545..1218499 (-)	2955	WP_242505138.1	DUF6531 domain-containing protein	-
XCCCN03_RS05330	coaE	1218644..1219264 (-)	621	WP_129588888.1	dephospho-CoA kinase	-
XCCCN03_RS05335	-	1219278..1220141 (-)	864	WP_129588889.1	A24 family peptidase	-
XCCCN03_RS05340	pilC	1220148..1221404 (-)	1257	WP_129589289.1	type II secretion system F family protein	Machinery gene
XCCCN03_RS05345	pilA/pilAI	1221764..1222174 (+)	411	WP_129588890.1	pilin	Machinery gene
XCCCN03_RS05350	pilA/pilAI	1222249..1222656 (+)	408	WP_129588891.1	pilin	Machinery gene
XCCCN03_RS05355	pilB	1222777..1224510 (+)	1734	WP_129588892.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XCCCN03_RS05360	pilR	1224928..1226322 (-)	1395	WP_165349438.1	sigma-54 dependent transcriptional regulator	Regulator
XCCCN03_RS05365	-	1226531..1228141 (-)	1611	WP_012437608.1	HAMP domain-containing sensor histidine kinase	-
XCCCN03_RS05370	sucC	1228375..1229544 (+)	1170	WP_012437609.1	ADP-forming succinate--CoA ligase subunit beta	-
XCCCN03_RS05375	sucD	1229569..1230444 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
XCCCN03_RS05380	-	1230548..1230958 (+)	411	WP_029628876.1	DNA-binding protein	-
XCCCN03_RS05385	-	1230962..1231264 (+)	303	WP_011038207.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45407.68 Da
• Isoelectric Point: 10.2682

>NTDB_id=197531 XCCCN03_RS05340 WP_129589289.1 1220148..1221404(-) (pilC) [Xanthomonas campestris pv. campestris str. CN03]
MAAVRGAVKSKPTSQVEQMSAFVWEGTDKRGVKMKGEQTSKNPNLLRAELRRQGITPTVVKAKPKPLFGAAGKKITAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFRGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVVGFIFAYKRSPSMQHGMDRLILKVPIIGQVMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=197531 XCCCN03_RS05340 WP_129589289.1 1220148..1221404(-) (pilC) [Xanthomonas campestris pv. campestris str. CN03]
ATGGCAGCAGTGCGTGGAGCAGTCAAGAGCAAGCCGACCTCGCAGGTCGAACAGATGAGCGCGTTTGTCTGGGAGGGGAC
CGACAAGCGTGGCGTGAAGATGAAGGGCGAACAGACTTCCAAGAACCCTAACTTGCTACGTGCGGAGCTACGACGCCAGG
GTATTACGCCGACAGTAGTGAAGGCGAAACCCAAGCCCTTGTTTGGCGCTGCTGGAAAGAAGATTACAGCGAAGGATATT
TCATTCTTCAGCAGGCAAATGGCAACCATGATGAAATCGGGCGTGCCTATCGTCGGCGCACTGGAGATCATTGGTAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGCCAGATCCGAACTGACATCGAGGGAGGCTCGTCGCTACACGAGGCGG
TAAGCAAGCATCCCGTCCAGTTCGACGAGTTGTACAGAAACTTGGTCAAGGCAGGCGAAGGCGCCGGTGTCCTTGAGACA
GTGCTCGACACCATTGCAAGCTACAAAGAAAACATCGAAGCGTTGAAAGGCAAAATCAAGAAGGCGCTGTTCTACCCGGC
GATGGTCGTCGCTGTAGCGCTACTGGTCAGCGCGATCTTGTTGATCTTTGTCGTGCCACAATTCGAAGACGTCTTCAGGG
GCTTCGGCGCGGAACTTCCGGCATTTACGCAGATGATCGTCAACATGTCGCGTTTCATGGTGTCGTGGTGGTGGTTGATC
CTATTTGTCGCCATCGGAGCCGTCGTGGGCTTCATCTTTGCCTACAAACGTTCACCTTCAATGCAGCACGGTATGGATCG
CTTGATCCTCAAGGTGCCGATCATCGGGCAGGTAATGCACAATAGCTCCATCGCCCGCTTCGCCCGTACCACCGCAGTGA
CGTTCAAGGCAGGCGTGCCGTTGGTGGAAGCCCTAAGTATCGTTGCTGGCGCTACAGGCAATTCTGTTTATGAAGCAGCA
GTATTGCGGATGCGCGACGACGTGTCCGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGTCAATCTGTTCCCGCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAAGCGGGCGCACTGGATGCCATGCTGTTCAAGGTAGCGGAGTACTTCGAGC
AGGAGGTCAACAATGCGGTCGACGCGCTGAGCAGCCTGATCGAACCCCTCATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.266	95.215	0.507
pilC	Legionella pneumophila strain ERS1305867	52.645	94.976	0.5
pilC	Acinetobacter baylyi ADP1	50.495	96.651	0.488
pilC	Acinetobacter baumannii D1279779	50.495	96.651	0.488
pilG	Neisseria gonorrhoeae MS11	44.389	95.933	0.426
pilG	Neisseria meningitidis 44/76-A	43.89	95.933	0.421
pilC	Vibrio cholerae strain A1552	40.494	96.89	0.392
pilC	Vibrio campbellii strain DS40M4	39.651	95.933	0.38
pilC	Thermus thermophilus HB27	37.717	96.411	0.364