Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   WH25_RS10280 Genome accession   NZ_CP017295
Coordinates   2148111..2148506 (+) Length   131 a.a.
NCBI ID   WP_046164720.1    Uniprot ID   A0A0F5MM81
Organism   Streptococcus gordonii strain IE35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143111..2153506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS10255 (WH25_10255) - 2144317..2145303 (-) 987 WP_046164716.1 substrate-binding domain-containing protein -
  WH25_RS10260 (WH25_10260) pepA 2145554..2146621 (-) 1068 WP_046164717.1 glutamyl aminopeptidase -
  WH25_RS10265 (WH25_10265) - 2146803..2147087 (+) 285 WP_008810041.1 DUF4651 domain-containing protein -
  WH25_RS10270 (WH25_10270) - 2147087..2147404 (+) 318 WP_046164718.1 thioredoxin family protein -
  WH25_RS10275 (WH25_10275) ytpR 2147421..2148047 (+) 627 WP_046164719.1 YtpR family tRNA-binding protein -
  WH25_RS10280 (WH25_10280) ssbB/cilA 2148111..2148506 (+) 396 WP_046164720.1 single-stranded DNA-binding protein Machinery gene
  WH25_RS10285 (WH25_10285) - 2148685..2150169 (+) 1485 WP_046164762.1 DUF1846 domain-containing protein -
  WH25_RS10290 (WH25_10290) - 2150223..2150657 (-) 435 WP_046164721.1 hypothetical protein -
  WH25_RS10915 - 2150667..2150831 (-) 165 WP_082730221.1 hypothetical protein -
  WH25_RS10295 (WH25_10295) - 2150828..2151031 (-) 204 WP_046164722.1 helix-turn-helix transcriptional regulator -
  WH25_RS10300 (WH25_10300) - 2151180..2152217 (-) 1038 WP_046164723.1 sensor histidine kinase -
  WH25_RS10305 (WH25_10305) - 2152184..2152882 (-) 699 WP_046164724.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14776.67 Da        Isoelectric Point: 6.2467

>NTDB_id=197445 WH25_RS10280 WP_046164720.1 2148111..2148506(+) (ssbB/cilA) [Streptococcus gordonii strain IE35]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRFKDQNGEREADFINIVLWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=197445 WH25_RS10280 WP_046164720.1 2148111..2148506(+) (ssbB/cilA) [Streptococcus gordonii strain IE35]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACAATTGCTGTTAACCGTCGTTTTAAGGACCAAAATGGTGAACGTGAAGCAGACTTTATCAATATCGTCCTTT
GGGGCAAATTGGCTGAGACTCTGGCTAGTTATGCCAGCAAAGGAAGCTTGATCTCTCTGGACGGCGAACTACGGACCCGT
CGTTATGAAAAAGACGGTGTGACTCACTATGTCACAGAAGTCCTTGGACATGGTTTCCAGCTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGAGCCGATTTGGCTGACCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MM81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

81.679

100

0.817
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

80.916

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment