Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABE28_RS22695 Genome accession   NZ_CP017080
Coordinates   4677417..4677779 (-) Length   120 a.a.
NCBI ID   WP_064467134.1    Uniprot ID   A0A1B3XVC4
Organism   Peribacillus muralis strain G25-68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4672417..4682779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS22675 (ABE28_022675) - 4673206..4674819 (-) 1614 WP_064467138.1 ABC transporter substrate-binding protein -
  ABE28_RS22680 (ABE28_022680) - 4674864..4675832 (-) 969 WP_064467137.1 ABC transporter ATP-binding protein -
  ABE28_RS22685 (ABE28_022685) - 4675813..4676817 (-) 1005 WP_156775892.1 ABC transporter ATP-binding protein -
  ABE28_RS22690 (ABE28_022690) - 4677107..4677400 (-) 294 WP_064467135.1 hypothetical protein -
  ABE28_RS22695 (ABE28_022695) ssbB 4677417..4677779 (-) 363 WP_064467134.1 single-stranded DNA-binding protein Machinery gene
  ABE28_RS22700 (ABE28_022700) - 4678148..4678582 (+) 435 WP_064467133.1 YwpF family protein -
  ABE28_RS22705 (ABE28_022705) - 4678683..4678961 (-) 279 WP_257390667.1 hypothetical protein -
  ABE28_RS22710 (ABE28_022710) fabZ 4679204..4679632 (-) 429 WP_064467132.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABE28_RS22715 (ABE28_022715) - 4679761..4680018 (-) 258 WP_064467131.1 DNA-directed RNA polymerase subunit beta -
  ABE28_RS22720 (ABE28_022720) - 4680190..4681038 (-) 849 WP_064467130.1 flagellar hook-basal body protein -
  ABE28_RS22725 (ABE28_022725) - 4681094..4681930 (-) 837 WP_064467129.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13546.55 Da        Isoelectric Point: 9.6729

>NTDB_id=195305 ABE28_RS22695 WP_064467134.1 4677417..4677779(-) (ssbB) [Peribacillus muralis strain G25-68]
MINQVTLVGRLTKDPVLRYTPDGKAVSNVTLAVNRHFRNTVGDYEADFVQCIIWKKSAENTAQYCKKGTLIGITGRIQTR
TYENKDGKNIYATEVVADLVQFIGPKQQDMKPKDFQHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=195305 ABE28_RS22695 WP_064467134.1 4677417..4677779(-) (ssbB) [Peribacillus muralis strain G25-68]
ATGATTAACCAAGTAACCCTTGTCGGCAGGCTTACAAAGGATCCTGTGTTAAGATATACCCCCGATGGCAAGGCTGTTTC
CAATGTCACGTTAGCGGTCAACCGTCATTTCCGTAATACGGTTGGTGACTATGAAGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCCCAGTATTGTAAAAAAGGGACCTTGATCGGGATTACGGGCAGGATTCAAACGAGG
ACATACGAAAACAAAGATGGCAAAAATATATATGCAACTGAAGTGGTCGCGGACTTGGTTCAGTTCATTGGACCTAAACA
GCAAGACATGAAGCCAAAGGACTTTCAGCATATTGGGTTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XVC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.303

90.833

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

88.333

0.517
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

81.667

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

90

0.4
  ssbA Streptococcus mutans UA159

43.519

90

0.392
  ssbB Lactococcus lactis subsp. cremoris KW2

44.66

85.833

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

41.667

90

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

90

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae D39

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae R6

40.741

90

0.367
  ssbB/cilA Streptococcus mitis SK321

40.741

90

0.367

Multiple sequence alignment