Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BGM23_RS03495 Genome accession   NZ_CP017072
Coordinates   650047..650388 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus sp. FJAT-14266     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 645047..655388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS03460 (BGM23_03460) rapD 645190..646254 (-) 1065 WP_029726041.1 aspartate phosphatase RapD -
  BGM23_RS03465 (BGM23_03465) fabZ 646446..646871 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BGM23_RS03470 (BGM23_03470) mscL 646944..647339 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  BGM23_RS03475 (BGM23_03475) - 647387..648222 (-) 836 Protein_644 histidine kinase -
  BGM23_RS21740 - 648151..648483 (+) 333 WP_214286096.1 prealbumin-like fold domain-containing protein -
  BGM23_RS03480 (BGM23_03480) - 648470..648862 (+) 393 Protein_646 class A sortase -
  BGM23_RS03485 (BGM23_03485) - 649002..649412 (-) 411 WP_014481144.1 YwpF-like family protein -
  BGM23_RS03490 (BGM23_03490) ywpG 649587..649970 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  BGM23_RS03495 (BGM23_03495) ssbB 650047..650388 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  BGM23_RS03500 (BGM23_03500) glcR 650612..651388 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  BGM23_RS03505 (BGM23_03505) ywpJ 651394..652251 (+) 858 WP_038427970.1 phosphatase YwpJ -
  BGM23_RS03510 (BGM23_03510) - 652379..655147 (-) 2769 WP_038427969.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=195160 BGM23_RS03495 WP_003227798.1 650047..650388(+) (ssbB) [Bacillus sp. FJAT-14266]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=195160 BGM23_RS03495 WP_003227798.1 650047..650388(+) (ssbB) [Bacillus sp. FJAT-14266]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment