Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BGI23_RS10535 Genome accession   NZ_CP017016
Coordinates   2008118..2008453 (+) Length   111 a.a.
NCBI ID   WP_000982010.1    Uniprot ID   A0A1J9Y2D4
Organism   Bacillus sp. ABP14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2003118..2013453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI23_RS10510 (BGI23_10510) - 2003397..2004143 (-) 747 WP_044792576.1 hypothetical protein -
  BGI23_RS10515 (BGI23_10515) - 2004253..2004900 (+) 648 WP_070805891.1 HD domain-containing protein -
  BGI23_RS10520 (BGI23_10520) - 2004897..2006792 (+) 1896 WP_070805892.1 ABC-F family ATP-binding cassette domain-containing protein -
  BGI23_RS10525 (BGI23_10525) - 2006868..2007599 (+) 732 WP_001260643.1 Bax inhibitor-1/YccA family protein -
  BGI23_RS10530 (BGI23_10530) - 2007705..2007959 (+) 255 WP_000975123.1 DUF4318 domain-containing protein -
  BGI23_RS10535 (BGI23_10535) ssbA 2008118..2008453 (+) 336 WP_000982010.1 single-stranded DNA-binding protein Machinery gene
  BGI23_RS10540 (BGI23_10540) - 2008482..2009072 (-) 591 WP_070805893.1 TetR/AcrR family transcriptional regulator -
  BGI23_RS10545 (BGI23_10545) - 2009195..2010328 (-) 1134 WP_001066846.1 FAD-dependent monooxygenase -
  BGI23_RS10550 (BGI23_10550) - 2010587..2011714 (+) 1128 WP_070805894.1 conserved virulence factor C family protein -
  BGI23_RS10555 (BGI23_10555) - 2011718..2012101 (+) 384 WP_000634875.1 thiol-disulfide oxidoreductase DCC family protein -
  BGI23_RS10560 (BGI23_10560) - 2012185..2012619 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  BGI23_RS10565 (BGI23_10565) - 2012669..2013445 (+) 777 WP_044792572.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12729.53 Da        Isoelectric Point: 9.4344

>NTDB_id=194490 BGI23_RS10535 WP_000982010.1 2008118..2008453(+) (ssbA) [Bacillus sp. ABP14]
MMNRVVLIGRLTKEPELYYTKQGVAYARACVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=194490 BGI23_RS10535 WP_000982010.1 2008118..2008453(+) (ssbA) [Bacillus sp. ABP14]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCATATGC
ACGAGCATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGACTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATAACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9Y2D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396

Multiple sequence alignment