Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC55_RS00190 Genome accession   NZ_CP016987
Coordinates   38701..39816 (+) Length   371 a.a.
NCBI ID   WP_000654779.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33701..44816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS00170 (FORC55_0031) rsmB 34624..35904 (-) 1281 WP_001102806.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FORC55_RS00175 (FORC55_0032) fmt 35960..36907 (-) 948 WP_000083531.1 methionyl-tRNA formyltransferase -
  FORC55_RS00180 (FORC55_0033) def 36925..37434 (-) 510 WP_000115010.1 peptide deformylase -
  FORC55_RS00185 (FORC55_0034) - 37574..38701 (+) 1128 WP_187371125.1 LysM peptidoglycan-binding domain-containing protein -
  FORC55_RS00190 (FORC55_0035) dprA 38701..39816 (+) 1116 WP_000654779.1 DNA-processing protein DprA Machinery gene
  FORC55_RS00195 (FORC55_0036) - 39819..40295 (+) 477 WP_000979771.1 DUF494 family protein -
  FORC55_RS00200 (FORC55_0037) - 40309..40875 (+) 567 WP_000087524.1 type I DNA topoisomerase -
  FORC55_RS00205 (FORC55_0038) - 40948..42081 (-) 1134 WP_001265393.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC55_RS00210 (FORC55_0039) purE 42085..42570 (-) 486 WP_000215772.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC55_RS00215 (FORC55_0040) - 42737..43294 (+) 558 WP_001911770.1 L-threonylcarbamoyladenylate synthase -
  FORC55_RS00220 (FORC55_0041) hemF 43313..44230 (+) 918 WP_000443982.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39945.90 Da        Isoelectric Point: 7.1952

>NTDB_id=194299 FORC55_RS00190 WP_000654779.1 38701..39816(+) (dprA) [Vibrio cholerae strain FORC_055 isolate MFDS]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAEQCLQWRAAANNRYIV
TPHCPLYPRLLKEISSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=194299 FORC55_RS00190 WP_000654779.1 38701..39816(+) (dprA) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCAGTGTTTGCAATGGCGTGCCGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCCCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCGTCCTGTTTATTGAAGGGATATG
GGAAGCGGTGCATGACCCCGCGGTGGCTATCGTGGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGAGCTCGCACAGTCAGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGC
GCTTTGCAAGCACAAGGGCAAACCGTAGCAGTATTAGGTTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGAGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCTCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCTGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CGCTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGTCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.922

100

0.989
  dprA Vibrio campbellii strain DS40M4

58.378

99.73

0.582
  dprA Glaesserella parasuis strain SC1401

44.149

100

0.447
  dprA Legionella pneumophila strain ERS1305867

43.048

100

0.434
  dprA Neisseria meningitidis MC58

37.845

100

0.407
  dprA Neisseria meningitidis strain C311

37.845

100

0.407
  dprA Neisseria gonorrhoeae strain FA1090

36.658

100

0.396
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Neisseria gonorrhoeae MS11

35.84

100

0.385
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Acinetobacter baylyi ADP1

41.742

89.757

0.375
  dprA Haemophilus influenzae Rd KW20

48.746

75.202

0.367

Multiple sequence alignment