Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BARD7_RS16100 Genome accession   NZ_CP016913
Coordinates   3260423..3260764 (-) Length   113 a.a.
NCBI ID   WP_065982516.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3255423..3265764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS16085 (BARD7_03282) - 3255691..3258465 (+) 2775 WP_065982514.1 DEAD/DEAH box helicase -
  BARD7_RS16090 (BARD7_03283) - 3258578..3259435 (-) 858 WP_065982515.1 Cof-type HAD-IIB family hydrolase -
  BARD7_RS16095 (BARD7_03284) - 3259432..3260214 (-) 783 WP_045512580.1 DeoR/GlpR family DNA-binding transcription regulator -
  BARD7_RS16100 (BARD7_03285) ssbB 3260423..3260764 (-) 342 WP_065982516.1 single-stranded DNA-binding protein Machinery gene
  BARD7_RS16105 (BARD7_03286) - 3260861..3261211 (-) 351 WP_065982517.1 hypothetical protein -
  BARD7_RS16110 (BARD7_03287) - 3261383..3261793 (+) 411 WP_013353872.1 YwpF-like family protein -
  BARD7_RS16115 (BARD7_03288) mscL 3261839..3262234 (-) 396 WP_065982518.1 large conductance mechanosensitive channel protein MscL -
  BARD7_RS16120 (BARD7_03289) fabZ 3262289..3262714 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BARD7_RS16125 (BARD7_03290) - 3262909..3263973 (+) 1065 WP_065982519.1 tetratricopeptide repeat protein -
  BARD7_RS16130 (BARD7_03291) - 3263991..3264812 (-) 822 WP_065982932.1 flagellar hook-basal body protein -
  BARD7_RS16135 (BARD7_03292) - 3264837..3265634 (-) 798 WP_065982520.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12634.50 Da        Isoelectric Point: 9.5812

>NTDB_id=193658 BARD7_RS16100 WP_065982516.1 3260423..3260764(-) (ssbB) [Bacillus amyloliquefaciens strain RD7-7]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVSRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=193658 BARD7_RS16100 WP_065982516.1 3260423..3260764(-) (ssbB) [Bacillus amyloliquefaciens strain RD7-7]
TTGTTTAACCACGTTATGCTTGTCGGGCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACCTTGGCGGTGAGCCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGTACTGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCGCTGTACTGCCAAAAAGGGTCAATGGTCGGTGTGAGCGGCAGAATCCAGACGAGG
AGCTATGAAAAGACAGACGGTGTAAAAGTCTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

93.805

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363

Multiple sequence alignment