Detailed information NTG0187603

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: BBF96_RS03385
• Genome accession: NZ_CP016379
• Coordinates: 753870..754268 (+)
• Length: 132 a.a.
• NCBI ID: WP_127015837.1
• Uniprot ID: A0A3Q9HPG4
• Organism: Anoxybacter fermentans strain DY22613
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 748870..759268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBF96_RS16335	-	749165..749311 (+)	147	WP_164730876.1	hypothetical protein	-
BBF96_RS03350 (BBF96_03360)	-	749312..750247 (+)	936	WP_127015831.1	putative quorum-sensing-regulated virulence factor	-
BBF96_RS03355 (BBF96_03365)	-	750405..752288 (+)	1884	WP_164730877.1	helicase-related protein	-
BBF96_RS03365 (BBF96_03375)	-	752684..752941 (+)	258	WP_127015833.1	hypothetical protein	-
BBF96_RS03370 (BBF96_03380)	-	752999..753319 (+)	321	WP_127015834.1	ASCH domain-containing protein	-
BBF96_RS03375 (BBF96_03385)	-	753316..753519 (+)	204	WP_127015835.1	DUF5131 family protein	-
BBF96_RS03380 (BBF96_03390)	-	753501..753734 (+)	234	WP_127015836.1	helix-turn-helix domain-containing protein	-
BBF96_RS16340	-	753728..753877 (+)	150	WP_164730878.1	hypothetical protein	-
BBF96_RS03385 (BBF96_03395)	ssbA	753870..754268 (+)	399	WP_127015837.1	single-stranded DNA-binding protein	Machinery gene
BBF96_RS16345	-	754398..754574 (+)	177	WP_164730879.1	hypothetical protein	-
BBF96_RS03390 (BBF96_03400)	-	754602..755642 (+)	1041	WP_127015838.1	hypothetical protein	-
BBF96_RS03395 (BBF96_03405)	dndC	755655..757061 (+)	1407	WP_127015839.1	DNA phosphorothioation system sulfurtransferase DndC	-
BBF96_RS03400 (BBF96_03410)	-	757074..757742 (+)	669	WP_127015840.1	helix-turn-helix domain-containing protein	-
BBF96_RS03405 (BBF96_03415)	-	757830..758087 (+)	258	WP_127015841.1	hypothetical protein	-
BBF96_RS03410 (BBF96_03420)	-	758038..758340 (+)	303	WP_127015842.1	hypothetical protein	-
BBF96_RS16350	-	758415..758588 (+)	174	WP_164730880.1	hypothetical protein	-
BBF96_RS03415 (BBF96_03425)	-	758702..759082 (+)	381	WP_127015843.1	hypothetical protein	-

Sequence

Protein

• Length: 132 a.a.
• Molecular weight: 14983.67 Da
• Isoelectric Point: 4.6326

>NTDB_id=187603 BBF96_RS03385 WP_127015837.1 753870..754268(+) (ssbA) [Anoxybacter fermentans strain DY22613]
MLNRVVLIGRLTRDPELRYTTNGTAVATFALAVERPFTNQNGERDVDFIDIVVWRKLAETCANHLGKGRLVAVEGRLQTR
SYDDSNGIRRRAVEVVADSVRFLDWPKNNSTDNFDGQDFGGDFYEDDIDVPF

Nucleotide

• Length: 399 bp

>NTDB_id=187603 BBF96_RS03385 WP_127015837.1 753870..754268(+) (ssbA) [Anoxybacter fermentans strain DY22613]
ATGCTTAATCGGGTAGTTTTGATTGGGCGTCTGACGAGGGACCCGGAACTTCGCTATACCACCAATGGTACAGCAGTAGC
TACTTTTGCCCTTGCAGTAGAGCGTCCTTTTACTAATCAAAATGGCGAACGGGATGTAGATTTTATTGATATTGTTGTCT
GGCGTAAGTTGGCAGAGACATGTGCTAATCATTTAGGAAAAGGGCGCCTGGTTGCAGTAGAAGGACGTTTGCAAACCAGA
TCTTATGATGACAGCAACGGTATTCGGCGTAGAGCGGTAGAGGTTGTTGCAGATAGTGTACGCTTCTTAGATTGGCCTAA
GAATAATTCTACAGATAATTTTGATGGACAAGATTTTGGTGGCGATTTTTATGAGGATGATATTGATGTTCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A3Q9HPG4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.815	81.818	0.53
ssb	Latilactobacillus sakei subsp. sakei 23K	57.692	78.788	0.455
ssbB	Bacillus subtilis subsp. subtilis str. 168	49.558	85.606	0.424
ssbB/cilA	Streptococcus mitis SK321	39.85	100	0.402
ssbB/cilA	Streptococcus pneumoniae TIGR4	39.85	100	0.402
ssb	Neisseria meningitidis MC58	41.732	96.212	0.402
ssbB/cilA	Streptococcus mitis NCTC 12261	39.098	100	0.394
ssbB/cilA	Streptococcus pneumoniae Rx1	39.098	100	0.394
ssbB/cilA	Streptococcus pneumoniae D39	39.098	100	0.394
ssbB/cilA	Streptococcus pneumoniae R6	39.098	100	0.394
ssb	Neisseria gonorrhoeae MS11	44.144	84.091	0.371
ssbB	Streptococcus sobrinus strain NIDR 6715-7	36.364	100	0.364