Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BA891_RS13465 Genome accession   NZ_CP016347
Coordinates   2962823..2964562 (-) Length   579 a.a.
NCBI ID   WP_065302943.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2957823..2969562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS13445 (BA891_13445) - 2958529..2959368 (-) 840 WP_020334610.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BA891_RS13450 (BA891_13450) - 2959438..2960931 (-) 1494 WP_065302942.1 SPOR domain-containing protein -
  BA891_RS13455 (BA891_13455) aroB 2960984..2962084 (-) 1101 WP_014233146.1 3-dehydroquinate synthase -
  BA891_RS13460 (BA891_13460) aroK 2962116..2962634 (-) 519 WP_014233147.1 shikimate kinase AroK -
  BA891_RS13465 (BA891_13465) pilQ 2962823..2964562 (-) 1740 WP_065302943.1 type IV pilus secretin PilQ Machinery gene
  BA891_RS13470 (BA891_13470) pilP 2964594..2965109 (-) 516 WP_014233149.1 pilus assembly protein PilP Machinery gene
  BA891_RS13475 (BA891_13475) pilO 2965099..2965692 (-) 594 WP_065302944.1 type 4a pilus biogenesis protein PilO Machinery gene
  BA891_RS13480 (BA891_13480) pilN 2965685..2966260 (-) 576 WP_065302945.1 PilN domain-containing protein Machinery gene
  BA891_RS13485 (BA891_13485) pilM 2966244..2967260 (-) 1017 WP_065302946.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63522.46 Da        Isoelectric Point: 4.3767

>NTDB_id=187179 BA891_RS13465 WP_065302943.1 2962823..2964562(-) (pilQ) [Vibrio natriegens strain CCUG 16371]
MIMRQGLTRTPRMLTGLLSFWLVLLFPPFSLADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVDSVEVFREVSTTRLVAHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQQLEEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVK
QVQIEARIVTVSEGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSI
AFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITP
DNRLVLDLSVTQDRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY
EKVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=187179 BA891_RS13465 WP_065302943.1 2962823..2964562(-) (pilQ) [Vibrio natriegens strain CCUG 16371]
ATGATAATGAGACAAGGACTTACACGTACACCAAGGATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTCC
CCCTTTTTCTTTGGCTGATGGCGGGATGTCTAATGCGTTAAAGAGTATCGACTTTCGCACGAACAAGGACAAAGACGCGG
TGATTGTGGTGGAACTGTCTTCACCGGCTGCGATTGTCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTG
AATACGTCAGTGAAAGATGAGCAGTTATATCTCCTCGATGTAAAAGACTTTTCAACGGTAGTGGACAGTGTGGAAGTCTT
TCGTGAAGTCTCGACGACCCGTTTAGTCGCGCATATTAGTGATGATTACACCCATGATTACCGTTTGGCAGGGCGCTATT
TGGAAATCACGGTCAGTAAACTCAAATCTGATGAAAAAACACCAGATAAGAGCATTTTAGAGAAAGAAGGCAAACTGATA
TCGATTAACTTCCAGGATATCCCGGTACGTAACGTCTTACAGCTTATTGCCGACTATAACCAGTTTAACCTGGTGGTATC
AGACTCGGTCGAAGGCAACCTCACACTGCGACTTGATGGTGTGCCTTGGCAGCAGGTTTTGGACATTATTCTGCAAGTAA
AAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTCTTGTCGCGCCGACCGATGAGCTTGACCTTCGAGAGAAGCAGCAA
CTAGAGAAGCAGCAACTTGAAGAGGAAATGGGTGAACTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGA
TATCGCTGAGATGATTAATGGTGAAGGCAATATCAGCATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTA
ACTCACTATTGGTCAGAGAATTGCCAGAGAATATTTTGGTTATTCGTGACATTATCGAATCACTCGATATTCCGGTTAAG
CAGGTCCAAATCGAAGCGAGGATTGTCACCGTCAGTGAAGGGAATATGGATGAACTTGGCATTCGATGGGGATTCTCTTC
CATCAACGGCAATAACACCGTTGGTGGCTCGATTGAGAATAACCTCGCAACCATTGGGCTTTATGAAGGTGATGGTGAAG
AGGGTGAGGGCGGCAGTGTTGGAATTGATGATTTTCTTAACGTCAATCTGGCCGCTACTAACCCGAGCGCAACCAGCATT
GCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTGCTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCTGA
GATCATCTCAAGCCCTCGTTTAATCACGACTAATAAAAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAG
AATCATCATCGAGTGGTGCGACAACCATCACGTTCAAAAAAGCGGTGTTAAGTTTAAAGGTAACGCCACAAATTACCCCG
GATAACCGTCTGGTGTTGGATTTAAGTGTTACTCAGGACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGT
CACAATAGACACCCAGAGAATCGGGACTCAAGTCTTAGTCAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAAC
ACAGCATTACCAACTCTGTCGATAAAGTGCCATTACTCGGTGATCTGCCGTTATTAGGTGCTCTGTTCCGCAGAAGTTAT
GAAAAAGTTGGCAAAAGTGAACTGCTGATTTTCGTTACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(419-577)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

88.966

100

0.891
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.106

97.582

0.743
  pilQ Vibrio cholerae strain A1552

76.106

97.582

0.743
  pilQ Legionella pneumophila strain Lp02

41.273

94.991

0.392
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.991

0.392
  pilQ Pseudomonas aeruginosa PAK

40.288

96.028

0.387
  pilQ Acinetobacter baumannii strain A118

37.584

100

0.387
  pilQ Acinetobacter baumannii D1279779

37.584

100

0.387
  comQ Acinetobacter baylyi ADP1

37.197

99.827

0.371

Multiple sequence alignment