Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BA891_RS13475 | Genome accession | NZ_CP016347 |
| Coordinates | 2965099..2965692 (-) | Length | 197 a.a. |
| NCBI ID | WP_065302944.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16371 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2960099..2970692
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA891_RS13455 (BA891_13455) | aroB | 2960984..2962084 (-) | 1101 | WP_014233146.1 | 3-dehydroquinate synthase | - |
| BA891_RS13460 (BA891_13460) | aroK | 2962116..2962634 (-) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| BA891_RS13465 (BA891_13465) | pilQ | 2962823..2964562 (-) | 1740 | WP_065302943.1 | type IV pilus secretin PilQ | Machinery gene |
| BA891_RS13470 (BA891_13470) | pilP | 2964594..2965109 (-) | 516 | WP_014233149.1 | pilus assembly protein PilP | Machinery gene |
| BA891_RS13475 (BA891_13475) | pilO | 2965099..2965692 (-) | 594 | WP_065302944.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BA891_RS13480 (BA891_13480) | pilN | 2965685..2966260 (-) | 576 | WP_065302945.1 | PilN domain-containing protein | Machinery gene |
| BA891_RS13485 (BA891_13485) | pilM | 2966244..2967260 (-) | 1017 | WP_065302946.1 | type IV pilus assembly protein PilM | Machinery gene |
| BA891_RS13490 (BA891_13490) | - | 2967404..2969971 (+) | 2568 | WP_065302947.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23136.61 Da Isoelectric Point: 4.7130
>NTDB_id=187181 BA891_RS13475 WP_065302944.1 2965099..2965692(-) (pilO) [Vibrio natriegens strain CCUG 16371]
MVNWQDLEMDEIAEWPLIPQLLVISLFILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLLVISLFILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=187181 BA891_RS13475 WP_065302944.1 2965099..2965692(-) (pilO) [Vibrio natriegens strain CCUG 16371]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
CATTCTTTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACTCTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTGCCCGCCCAGAAAGAGTTAGCCACGATGCTGGCGTCCGTCAATGA
GCTCGGCATAGACAATAAACTGACCTTCACACGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTCTATATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
CATTCTTTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACTCTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTGCCCGCCCAGAAAGAGTTAGCCACGATGCTGGCGTCCGTCAATGA
GCTCGGCATAGACAATAAACTGACCTTCACACGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTCTATATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.558 |
100 |
0.706 |