Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | BA891_RS13470 | Genome accession | NZ_CP016347 |
| Coordinates | 2964594..2965109 (-) | Length | 171 a.a. |
| NCBI ID | WP_014233149.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16371 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2959594..2970109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA891_RS13455 (BA891_13455) | aroB | 2960984..2962084 (-) | 1101 | WP_014233146.1 | 3-dehydroquinate synthase | - |
| BA891_RS13460 (BA891_13460) | aroK | 2962116..2962634 (-) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| BA891_RS13465 (BA891_13465) | pilQ | 2962823..2964562 (-) | 1740 | WP_065302943.1 | type IV pilus secretin PilQ | Machinery gene |
| BA891_RS13470 (BA891_13470) | pilP | 2964594..2965109 (-) | 516 | WP_014233149.1 | pilus assembly protein PilP | Machinery gene |
| BA891_RS13475 (BA891_13475) | pilO | 2965099..2965692 (-) | 594 | WP_065302944.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BA891_RS13480 (BA891_13480) | pilN | 2965685..2966260 (-) | 576 | WP_065302945.1 | PilN domain-containing protein | Machinery gene |
| BA891_RS13485 (BA891_13485) | pilM | 2966244..2967260 (-) | 1017 | WP_065302946.1 | type IV pilus assembly protein PilM | Machinery gene |
| BA891_RS13490 (BA891_13490) | - | 2967404..2969971 (+) | 2568 | WP_065302947.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18917.06 Da Isoelectric Point: 10.3600
>NTDB_id=187180 BA891_RS13470 WP_014233149.1 2964594..2965109(-) (pilP) [Vibrio natriegens strain CCUG 16371]
MKNKSLLMVLIGALLVGCQANDESLTDFIRDVENQARRDVEKLKPSDQYVAVAYAPQTMRAPFELPREATIATQPIARKD
CWQPPSRTRTGKLEKVPLSQLRLKGVMGIGSTVSGLVQAPNGTVYKVAPGQYLGRNNGKVTKITHSYLLIDETLPDGLGC
WQKRKVKLALR
MKNKSLLMVLIGALLVGCQANDESLTDFIRDVENQARRDVEKLKPSDQYVAVAYAPQTMRAPFELPREATIATQPIARKD
CWQPPSRTRTGKLEKVPLSQLRLKGVMGIGSTVSGLVQAPNGTVYKVAPGQYLGRNNGKVTKITHSYLLIDETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=187180 BA891_RS13470 WP_014233149.1 2964594..2965109(-) (pilP) [Vibrio natriegens strain CCUG 16371]
ATGAAAAATAAATCTTTGCTGATGGTTCTGATAGGGGCGTTGCTGGTGGGGTGTCAGGCAAATGATGAGTCGTTAACGGA
CTTTATTCGTGACGTTGAAAATCAGGCGAGGCGGGATGTTGAGAAGCTCAAACCATCGGACCAATATGTCGCGGTTGCCT
ACGCGCCGCAAACAATGAGAGCGCCTTTTGAATTACCCCGAGAGGCGACGATTGCGACTCAACCTATTGCGAGAAAAGAC
TGCTGGCAGCCGCCATCCAGAACTCGTACTGGCAAGTTAGAAAAAGTTCCGTTAAGTCAGCTAAGGCTGAAAGGCGTTAT
GGGGATAGGCAGCACAGTCTCCGGACTTGTGCAGGCTCCGAATGGAACGGTTTACAAAGTCGCCCCCGGTCAGTATCTCG
GACGTAACAACGGTAAGGTCACCAAAATTACCCATTCTTACTTACTGATCGACGAAACGCTGCCTGATGGTTTGGGTTGC
TGGCAGAAACGCAAAGTAAAGCTGGCTTTGAGATAG
ATGAAAAATAAATCTTTGCTGATGGTTCTGATAGGGGCGTTGCTGGTGGGGTGTCAGGCAAATGATGAGTCGTTAACGGA
CTTTATTCGTGACGTTGAAAATCAGGCGAGGCGGGATGTTGAGAAGCTCAAACCATCGGACCAATATGTCGCGGTTGCCT
ACGCGCCGCAAACAATGAGAGCGCCTTTTGAATTACCCCGAGAGGCGACGATTGCGACTCAACCTATTGCGAGAAAAGAC
TGCTGGCAGCCGCCATCCAGAACTCGTACTGGCAAGTTAGAAAAAGTTCCGTTAAGTCAGCTAAGGCTGAAAGGCGTTAT
GGGGATAGGCAGCACAGTCTCCGGACTTGTGCAGGCTCCGAATGGAACGGTTTACAAAGTCGCCCCCGGTCAGTATCTCG
GACGTAACAACGGTAAGGTCACCAAAATTACCCATTCTTACTTACTGATCGACGAAACGCTGCCTGATGGTTTGGGTTGC
TGGCAGAAACGCAAAGTAAAGCTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
80.702 |
100 |
0.807 |
| pilP | Vibrio cholerae strain A1552 |
55.233 |
100 |
0.556 |