Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BA891_RS12165 | Genome accession | NZ_CP016347 |
| Coordinates | 2706957..2707406 (+) | Length | 149 a.a. |
| NCBI ID | WP_065302864.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16371 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2701957..2712406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA891_RS12150 (BA891_12150) | pdhR | 2703996..2704763 (-) | 768 | WP_065302861.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BA891_RS12155 (BA891_12155) | ampD | 2705173..2705718 (-) | 546 | WP_065302862.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BA891_RS12160 (BA891_12160) | nadC | 2705811..2706698 (+) | 888 | WP_065302863.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BA891_RS12165 (BA891_12165) | pilA | 2706957..2707406 (+) | 450 | WP_065302864.1 | pilin | Machinery gene |
| BA891_RS12170 (BA891_12170) | pilB | 2707410..2709095 (+) | 1686 | WP_065302865.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA891_RS12175 (BA891_12175) | pilC | 2709126..2710349 (+) | 1224 | WP_065302866.1 | type II secretion system F family protein | Machinery gene |
| BA891_RS12180 (BA891_12180) | pilD | 2710417..2711286 (+) | 870 | WP_065302867.1 | prepilin peptidase | Machinery gene |
| BA891_RS12185 (BA891_12185) | coaE | 2711287..2711901 (+) | 615 | WP_065302868.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15647.04 Da Isoelectric Point: 9.4891
>NTDB_id=187166 BA891_RS12165 WP_065302864.1 2706957..2707406(+) (pilA) [Vibrio natriegens strain CCUG 16371]
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSIRTNVEDYMVTTGSFPDNSTAGQKPED
LGVIQPKNGTISFDKEKGLILLAFAATGNSPDINSGKIALHRASGGTWTCKASPAAKLLPKSCAHDASL
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVAKSELGAGLATITSIRTNVEDYMVTTGSFPDNSTAGQKPED
LGVIQPKNGTISFDKEKGLILLAFAATGNSPDINSGKIALHRASGGTWTCKASPAAKLLPKSCAHDASL
Nucleotide
Download Length: 450 bp
>NTDB_id=187166 BA891_RS12165 WP_065302864.1 2706957..2707406(+) (pilA) [Vibrio natriegens strain CCUG 16371]
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATTGTAGTGGCGGTAATTGGTGTTTT
GGCAGCTATCGCTATTCCACAATATCAAAACTATGTAGCCAAGTCTGAGCTGGGAGCTGGTTTAGCCACAATTACCTCTA
TACGAACAAATGTAGAAGATTATATGGTGACAACCGGATCTTTCCCGGATAACTCAACAGCTGGTCAAAAACCAGAAGAT
CTGGGGGTGATTCAACCCAAAAATGGAACTATCTCATTTGATAAAGAAAAAGGTCTGATACTTCTTGCTTTCGCGGCCAC
TGGAAATAGCCCGGACATAAATAGTGGAAAAATTGCTCTCCACAGGGCTTCTGGTGGTACATGGACATGTAAGGCATCCC
CAGCAGCAAAACTCCTTCCAAAATCATGTGCTCATGATGCTTCCCTATAA
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATTGTAGTGGCGGTAATTGGTGTTTT
GGCAGCTATCGCTATTCCACAATATCAAAACTATGTAGCCAAGTCTGAGCTGGGAGCTGGTTTAGCCACAATTACCTCTA
TACGAACAAATGTAGAAGATTATATGGTGACAACCGGATCTTTCCCGGATAACTCAACAGCTGGTCAAAAACCAGAAGAT
CTGGGGGTGATTCAACCCAAAAATGGAACTATCTCATTTGATAAAGAAAAAGGTCTGATACTTCTTGCTTTCGCGGCCAC
TGGAAATAGCCCGGACATAAATAGTGGAAAAATTGCTCTCCACAGGGCTTCTGGTGGTACATGGACATGTAAGGCATCCC
CAGCAGCAAAACTCCTTCCAAAATCATGTGCTCATGATGCTTCCCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.988 |
100 |
0.523 |
| pilA | Vibrio cholerae strain A1552 |
46.988 |
100 |
0.523 |
| pilA | Vibrio cholerae C6706 |
46.988 |
100 |
0.523 |
| pilA | Pseudomonas aeruginosa PAK |
43.333 |
100 |
0.436 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.361 |
89.262 |
0.396 |
| pilA | Acinetobacter baumannii strain A118 |
41.135 |
94.631 |
0.389 |
| pilA | Acinetobacter nosocomialis M2 |
35.484 |
100 |
0.369 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36 |
100 |
0.362 |