Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BA891_RS12180 | Genome accession | NZ_CP016347 |
| Coordinates | 2710417..2711286 (+) | Length | 289 a.a. |
| NCBI ID | WP_065302867.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16371 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2705417..2716286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA891_RS12160 (BA891_12160) | nadC | 2705811..2706698 (+) | 888 | WP_065302863.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BA891_RS12165 (BA891_12165) | pilA | 2706957..2707406 (+) | 450 | WP_065302864.1 | pilin | Machinery gene |
| BA891_RS12170 (BA891_12170) | pilB | 2707410..2709095 (+) | 1686 | WP_065302865.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA891_RS12175 (BA891_12175) | pilC | 2709126..2710349 (+) | 1224 | WP_065302866.1 | type II secretion system F family protein | Machinery gene |
| BA891_RS12180 (BA891_12180) | pilD | 2710417..2711286 (+) | 870 | WP_065302867.1 | prepilin peptidase | Machinery gene |
| BA891_RS12185 (BA891_12185) | coaE | 2711287..2711901 (+) | 615 | WP_065302868.1 | dephospho-CoA kinase | - |
| BA891_RS12190 (BA891_12190) | zapD | 2711928..2712668 (+) | 741 | WP_014232955.1 | cell division protein ZapD | - |
| BA891_RS12195 (BA891_12195) | yacG | 2712742..2712936 (+) | 195 | WP_065302869.1 | DNA gyrase inhibitor YacG | - |
| BA891_RS12200 (BA891_12200) | rplS | 2713240..2713593 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| BA891_RS12205 (BA891_12205) | trmD | 2713634..2714395 (-) | 762 | WP_014232957.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BA891_RS12210 (BA891_12210) | rimM | 2714423..2714971 (-) | 549 | WP_014232958.1 | ribosome maturation factor RimM | - |
| BA891_RS12215 (BA891_12215) | rpsP | 2715002..2715250 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32304.36 Da Isoelectric Point: 6.4408
>NTDB_id=187169 BA891_RS12180 WP_065302867.1 2710417..2711286(+) (pilD) [Vibrio natriegens strain CCUG 16371]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
Nucleotide
Download Length: 870 bp
>NTDB_id=187169 BA891_RS12180 WP_065302867.1 2710417..2711286(+) (pilD) [Vibrio natriegens strain CCUG 16371]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTGCCCCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATCCCGGTTATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCTGGCTATGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACAGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTTGGTTGGCAAGCTTTACCAATAATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTGCCCCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATCCCGGTTATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCTGGCTATGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACAGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTTGGTTGGCAAGCTTTACCAATAATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.542 |
99.654 |
0.882 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
53.43 |
95.848 |
0.512 |
| pilD | Acinetobacter nosocomialis M2 |
53.069 |
95.848 |
0.509 |
| pilD | Neisseria gonorrhoeae MS11 |
46.739 |
95.502 |
0.446 |