Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC37_RS12730 | Genome accession | NZ_CP016321 |
| Coordinates | 2602877..2603275 (+) | Length | 132 a.a. |
| NCBI ID | WP_088428077.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_037 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2597877..2608275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC37_RS12715 (FORC37_2318) | pdhR | 2599946..2600713 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FORC37_RS12720 (FORC37_2319) | ampD | 2601102..2601674 (-) | 573 | WP_088428076.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC37_RS12725 (FORC37_2320) | nadC | 2601767..2602654 (+) | 888 | WP_017421195.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC37_RS12730 (FORC37_2321) | pilA | 2602877..2603275 (+) | 399 | WP_088428077.1 | pilin | Machinery gene |
| FORC37_RS12735 (FORC37_2322) | pilB | 2603280..2604968 (+) | 1689 | WP_088428078.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC37_RS12740 (FORC37_2323) | pilC | 2605016..2606242 (+) | 1227 | WP_039536096.1 | type II secretion system F family protein | Machinery gene |
| FORC37_RS12745 (FORC37_2324) | pilD | 2606336..2607205 (+) | 870 | WP_088428079.1 | prepilin peptidase | Machinery gene |
| FORC37_RS12750 (FORC37_2325) | coaE | 2607207..2607815 (+) | 609 | WP_039536087.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 13615.93 Da Isoelectric Point: 9.9917
>NTDB_id=186881 FORC37_RS12730 WP_088428077.1 2602877..2603275(+) (pilA) [Vibrio vulnificus strain FORC_037]
MKKLHKTKKQQGFTLIELMIVVAIIGILSAVAVPAYKNYVAKSEAATALGSIRALVTPAEMMIQENGTISGGVSALGGSA
SHALGTITAAGSKIEFTFGSGSLVNKKIALTKDASTGWKCTYDAGVPLDKCN
MKKLHKTKKQQGFTLIELMIVVAIIGILSAVAVPAYKNYVAKSEAATALGSIRALVTPAEMMIQENGTISGGVSALGGSA
SHALGTITAAGSKIEFTFGSGSLVNKKIALTKDASTGWKCTYDAGVPLDKCN
Nucleotide
Download Length: 399 bp
>NTDB_id=186881 FORC37_RS12730 WP_088428077.1 2602877..2603275(+) (pilA) [Vibrio vulnificus strain FORC_037]
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCAATCATTGGTAT
TTTGTCTGCCGTAGCTGTACCAGCATATAAAAATTATGTTGCTAAAAGCGAAGCAGCTACTGCGCTAGGGAGTATTCGAG
CTTTAGTAACCCCAGCTGAAATGATGATTCAAGAAAATGGGACGATTAGCGGAGGCGTCTCGGCTCTTGGCGGCTCAGCA
TCACACGCACTAGGAACAATAACTGCTGCAGGATCTAAAATTGAGTTTACCTTTGGGAGCGGTTCTTTAGTGAACAAGAA
AATTGCACTCACCAAAGATGCTTCCACTGGCTGGAAATGCACATATGATGCTGGCGTACCATTAGATAAATGTAATTAA
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCAATCATTGGTAT
TTTGTCTGCCGTAGCTGTACCAGCATATAAAAATTATGTTGCTAAAAGCGAAGCAGCTACTGCGCTAGGGAGTATTCGAG
CTTTAGTAACCCCAGCTGAAATGATGATTCAAGAAAATGGGACGATTAGCGGAGGCGTCTCGGCTCTTGGCGGCTCAGCA
TCACACGCACTAGGAACAATAACTGCTGCAGGATCTAAAATTGAGTTTACCTTTGGGAGCGGTTCTTTAGTGAACAAGAA
AATTGCACTCACCAAAGATGCTTCCACTGGCTGGAAATGCACATATGATGCTGGCGTACCATTAGATAAATGTAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.551 |
100 |
0.508 |
| pilA | Pseudomonas aeruginosa PAK |
43.796 |
100 |
0.455 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.304 |
100 |
0.432 |
| pilA | Vibrio cholerae strain A1552 |
40.602 |
100 |
0.409 |
| pilA | Vibrio cholerae C6706 |
40.602 |
100 |
0.409 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.602 |
100 |
0.409 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.463 |
93.182 |
0.386 |
| pilA | Acinetobacter baumannii strain A118 |
38.462 |
98.485 |
0.379 |