Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC37_RS12740 Genome accession   NZ_CP016321
Coordinates   2605016..2606242 (+) Length   408 a.a.
NCBI ID   WP_039536096.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2600016..2611242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS12720 (FORC37_2319) ampD 2601102..2601674 (-) 573 WP_088428076.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FORC37_RS12725 (FORC37_2320) nadC 2601767..2602654 (+) 888 WP_017421195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC37_RS12730 (FORC37_2321) pilA 2602877..2603275 (+) 399 WP_088428077.1 pilin Machinery gene
  FORC37_RS12735 (FORC37_2322) pilB 2603280..2604968 (+) 1689 WP_088428078.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC37_RS12740 (FORC37_2323) pilC 2605016..2606242 (+) 1227 WP_039536096.1 type II secretion system F family protein Machinery gene
  FORC37_RS12745 (FORC37_2324) pilD 2606336..2607205 (+) 870 WP_088428079.1 prepilin peptidase Machinery gene
  FORC37_RS12750 (FORC37_2325) coaE 2607207..2607815 (+) 609 WP_039536087.1 dephospho-CoA kinase -
  FORC37_RS12755 (FORC37_2326) zapD 2607848..2608588 (+) 741 WP_017421189.1 cell division protein ZapD -
  FORC37_RS12760 (FORC37_2327) yacG 2608651..2608845 (+) 195 WP_039536083.1 DNA gyrase inhibitor YacG -
  FORC37_RS12765 (FORC37_2328) rplS 2609037..2609390 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  FORC37_RS12770 (FORC37_2329) trmD 2609432..2610181 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC37_RS12775 (FORC37_2330) rimM 2610209..2610757 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  FORC37_RS12780 (FORC37_2331) rpsP 2610773..2611021 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45228.59 Da        Isoelectric Point: 10.3569

>NTDB_id=186883 FORC37_RS12740 WP_039536096.1 2605016..2606242(+) (pilC) [Vibrio vulnificus strain FORC_037]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKIKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=186883 FORC37_RS12740 WP_039536096.1 2605016..2606242(+) (pilC) [Vibrio vulnificus strain FORC_037]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAATCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTAATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAATTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTCGTCGTCGGCGGATTAGTCGCCGCCATGTACCTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

98.039

0.765
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

41.832

99.02

0.414
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilG Neisseria meningitidis 44/76-A

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Legionella pneumophila strain ERS1305867

40.547

98.529

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397

Multiple sequence alignment