Detailed information NTG0186884

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC37_RS12745
• Genome accession: NZ_CP016321
• Coordinates: 2606336..2607205 (+)
• Length: 289 a.a.
• NCBI ID: WP_088428079.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_037
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2601336..2612205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC37_RS12725 (FORC37_2320)	nadC	2601767..2602654 (+)	888	WP_017421195.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FORC37_RS12730 (FORC37_2321)	pilA	2602877..2603275 (+)	399	WP_088428077.1	pilin	Machinery gene
FORC37_RS12735 (FORC37_2322)	pilB	2603280..2604968 (+)	1689	WP_088428078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC37_RS12740 (FORC37_2323)	pilC	2605016..2606242 (+)	1227	WP_039536096.1	type II secretion system F family protein	Machinery gene
FORC37_RS12745 (FORC37_2324)	pilD	2606336..2607205 (+)	870	WP_088428079.1	prepilin peptidase	Machinery gene
FORC37_RS12750 (FORC37_2325)	coaE	2607207..2607815 (+)	609	WP_039536087.1	dephospho-CoA kinase	-
FORC37_RS12755 (FORC37_2326)	zapD	2607848..2608588 (+)	741	WP_017421189.1	cell division protein ZapD	-
FORC37_RS12760 (FORC37_2327)	yacG	2608651..2608845 (+)	195	WP_039536083.1	DNA gyrase inhibitor YacG	-
FORC37_RS12765 (FORC37_2328)	rplS	2609037..2609390 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
FORC37_RS12770 (FORC37_2329)	trmD	2609432..2610181 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC37_RS12775 (FORC37_2330)	rimM	2610209..2610757 (-)	549	WP_038941427.1	ribosome maturation factor RimM	-
FORC37_RS12780 (FORC37_2331)	rpsP	2610773..2611021 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32245.33 Da
• Isoelectric Point: 6.8198

>NTDB_id=186884 FORC37_RS12745 WP_088428079.1 2606336..2607205(+) (pilD) [Vibrio vulnificus strain FORC_037]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSIVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=186884 FORC37_RS12745 WP_088428079.1 2606336..2607205(+) (pilD) [Vibrio vulnificus strain FORC_037]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCGCTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTAATCGCCGCTACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGATTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTACAAAAACAAGGCATTGAGATGGCCTTTCCATTTGGGCCTTATTTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.163	100	0.772
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457