Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLUC063_RS02135 Genome accession   NZ_CP015905
Coordinates   416393..416782 (+) Length   129 a.a.
NCBI ID   WP_010905314.1    Uniprot ID   S6EQX8
Organism   Lactococcus lactis subsp. lactis strain UC063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 416393..435930 416393..416782 within 0


Gene organization within MGE regions


Location: 416393..435930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC063_RS02135 (LLUC063_0417) ssbB 416393..416782 (+) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  LLUC063_RS02140 (LLUC063_0418) groES 416902..417186 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLUC063_RS02145 (LLUC063_0419) groL 417274..418902 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LLUC063_RS02150 (LLUC063_0420) - 418948..419760 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  LLUC063_RS02155 (LLUC063_0421) - 419931..421373 (-) 1443 WP_058225839.1 cell wall metabolism sensor histidine kinase WalK -
  LLUC063_RS02160 (LLUC063_0422) yycF 421366..422067 (-) 702 WP_003131580.1 response regulator YycF -
  LLUC063_RS02165 (LLUC063_0423) tmk 422245..422880 (+) 636 WP_003131575.1 dTMP kinase -
  LLUC063_RS02170 (LLUC063_0424) - 423013..423873 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LLUC063_RS02175 (LLUC063_0425) ricT 423925..424707 (+) 783 WP_003131572.1 stage 0 sporulation family protein -
  LLUC063_RS02180 (LLUC063_0426) yabA 424700..425026 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LLUC063_RS02185 (LLUC063_0427) rsmI 425026..425901 (+) 876 WP_058225840.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLUC063_RS02190 (LLUC063_0428) - 425978..426169 (-) 192 WP_058225841.1 hypothetical protein -
  LLUC063_RS02195 (LLUC063_0429) - 426447..427184 (-) 738 WP_058225842.1 hypothetical protein -
  LLUC063_RS02200 (LLUC063_0430) - 427967..428299 (-) 333 WP_058225843.1 hypothetical protein -
  LLUC063_RS02205 (LLUC063_0431) - 428299..428688 (-) 390 WP_235589842.1 hypothetical protein -
  LLUC063_RS02210 (LLUC063_0432) - 428859..429431 (-) 573 WP_081196249.1 hypothetical protein -
  LLUC063_RS02215 (LLUC063_0433) - 429445..429759 (-) 315 WP_023163759.1 hypothetical protein -
  LLUC063_RS02220 (LLUC063_0434) - 429881..430030 (-) 150 WP_153951467.1 hypothetical protein -
  LLUC063_RS02225 (LLUC063_0435) - 430041..430934 (-) 894 WP_058225845.1 ATP-binding protein -
  LLUC063_RS02230 (LLUC063_0436) - 430946..431713 (-) 768 WP_081196250.1 phage replisome organiser protein -
  LLUC063_RS02235 (LLUC063_0437) - 431724..432050 (-) 327 WP_023163763.1 HTH domain-containing protein -
  LLUC063_RS02240 (LLUC063_0438) - 432037..432300 (-) 264 WP_058225847.1 hypothetical protein -
  LLUC063_RS02245 (LLUC063_0439) - 432314..432583 (-) 270 WP_039114629.1 hypothetical protein -
  LLUC063_RS02250 (LLUC063_0440) - 432580..433098 (-) 519 WP_058225848.1 hypothetical protein -
  LLUC063_RS02255 (LLUC063_0441) - 433103..433297 (-) 195 WP_023163769.1 DUF1655 domain-containing protein -
  LLUC063_RS02260 (LLUC063_0442) - 433423..433686 (-) 264 WP_058225849.1 hypothetical protein -
  LLUC063_RS02265 (LLUC063_0443) - 433738..433947 (-) 210 WP_058225850.1 helix-turn-helix transcriptional regulator -
  LLUC063_RS02270 (LLUC063_0444) - 434097..434651 (+) 555 WP_081042544.1 helix-turn-helix transcriptional regulator -
  LLUC063_RS02275 (LLUC063_0445) - 434731..435930 (+) 1200 WP_058225851.1 site-specific integrase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14672.73 Da        Isoelectric Point: 8.3705

>NTDB_id=183209 LLUC063_RS02135 WP_010905314.1 416393..416782(+) (ssbB) [Lactococcus lactis subsp. lactis strain UC063]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=183209 LLUC063_RS02135 WP_010905314.1 416393..416782(+) (ssbB) [Lactococcus lactis subsp. lactis strain UC063]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6EQX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

90.698

100

0.907
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364

Multiple sequence alignment