Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LLJM3_RS09460 Genome accession   NZ_CP015901
Coordinates   1850200..1850646 (-) Length   148 a.a.
NCBI ID   WP_228763864.1    Uniprot ID   -
Organism   Lactococcus cremoris strain JM3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1845200..1855646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM3_RS09430 (LLJM3_1855) - 1845544..1845759 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLJM3_RS09435 (LLJM3_1856) - 1845942..1846718 (-) 777 WP_011676769.1 alpha/beta hydrolase family protein -
  LLJM3_RS09440 (LLJM3_1857) - 1847002..1847307 (-) 306 Protein_1836 ComEC/Rec2 family competence protein -
  LLJM3_RS09445 (LLJM3_1858) - 1847328..1848218 (-) 891 WP_011675818.1 IS982-like element ISLll1 family transposase -
  LLJM3_RS09450 (LLJM3_03230) comEC 1848295..1848804 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLJM3_RS09455 (LLJM3_1859) comEC 1848801..1850072 (-) 1272 WP_324187454.1 ComEC/Rec2 family competence protein Machinery gene
  LLJM3_RS09460 (LLJM3_1860) comEA 1850200..1850646 (-) 447 WP_228763864.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLJM3_RS09465 (LLJM3_1861) - 1850912..1852273 (-) 1362 WP_011676773.1 ABC transporter permease -
  LLJM3_RS09470 (LLJM3_1862) - 1852270..1853199 (-) 930 WP_011676774.1 ABC transporter ATP-binding protein -
  LLJM3_RS09475 (LLJM3_1864) - 1853820..1854380 (-) 561 WP_011676776.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16038.01 Da        Isoelectric Point: 4.6909

>NTDB_id=183032 LLJM3_RS09460 WP_228763864.1 1850200..1850646(-) (comEA) [Lactococcus cremoris strain JM3]
MVDLKGAVAKPNVYQISSDERLVDLIRQAGGFTDQADQKSINLSAKLKDEEVIYVPKLGESSSSESTDSPISSSVSNQVS
TTSGPKININKADLTELQKLTGIGQKKAQDIIDFRMKNGDFKSIEDLGKVSGFGDKTLEKLKDEISID

Nucleotide


Download         Length: 447 bp        

>NTDB_id=183032 LLJM3_RS09460 WP_228763864.1 1850200..1850646(-) (comEA) [Lactococcus cremoris strain JM3]
ATGGTTGATTTGAAAGGAGCGGTTGCAAAACCTAATGTATACCAAATTTCGTCAGATGAGCGCCTTGTTGATTTAATTAG
GCAAGCGGGAGGATTTACTGACCAAGCAGACCAAAAATCAATCAATCTGTCAGCGAAACTTAAAGATGAAGAAGTAATTT
ATGTACCAAAACTTGGGGAAAGTTCAAGTTCAGAAAGTACTGACAGTCCTATTAGCAGCTCTGTCAGTAATCAAGTTTCA
ACGACAAGTGGTCCAAAAATAAATATCAATAAAGCAGACCTGACAGAATTACAAAAACTGACTGGAATTGGTCAAAAAAA
AGCGCAAGATATTATTGATTTTCGCATGAAAAATGGTGACTTTAAATCAATAGAGGATTTGGGTAAAGTATCTGGCTTTG
GGGATAAAACATTAGAAAAATTGAAAGATGAGATTTCTATTGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(1-56)

Helix-hairpin-helix motif (HHH_3)

(84-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

96.622

100

0.966
  comEA/celA/cilE Streptococcus mitis SK321

51.02

99.324

0.507
  comEA Latilactobacillus sakei subsp. sakei 23K

44.512

100

0.493
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.98

99.324

0.486
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.299

99.324

0.48
  comEA/celA/cilE Streptococcus pneumoniae D39

48.299

99.324

0.48
  comEA/celA/cilE Streptococcus pneumoniae R6

48.299

99.324

0.48
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.619

99.324

0.473
  comEA Streptococcus thermophilus LMD-9

43.421

100

0.446
  comEA Staphylococcus aureus N315

41.781

98.649

0.412
  comEA Staphylococcus aureus MW2

41.781

98.649

0.412
  comEA Bacillus subtilis subsp. subtilis str. 168

40.816

99.324

0.405

Multiple sequence alignment