Detailed information NTG0183030

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: LLJM3_RS09450
• Genome accession: NZ_CP015901
• Coordinates: 1848295..1848804 (-)
• Length: 169 a.a.
• NCBI ID: WP_021165649.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain JM3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1847362..1848252	1848295..1848804	flank	43

Gene organization within MGE regions

Location: 1847362..1848804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLJM3_RS09450 (LLJM3_03230)	comEC	1848295..1848804 (-)	510	WP_021165649.1	MBL fold metallo-hydrolase	Machinery gene

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18923.62 Da
• Isoelectric Point: 6.9787

>NTDB_id=183030 LLJM3_RS09450 WP_021165649.1 1848295..1848804(-) (comEC) [Lactococcus cremoris strain JM3]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWISPGELTNISFVEKLKKAKIPIHVSKVGDKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHT
KFLFTDPNC

Nucleotide

• Length: 510 bp

>NTDB_id=183030 LLJM3_RS09450 WP_021165649.1 1848295..1848804(-) (comEC) [Lactococcus cremoris strain JM3]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATTTCTTGTCCTTAGCTGATAAAATAAAAATAAGAGAAATCTGGATCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTC
TTCAAGTTTTATCAAATGGTTACACTAAAAAAGGGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACA
AAATTTCTTTTTACAGACCCGAATTGCTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (11-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Lactococcus lactis subsp. cremoris KW2	98.788	97.633	0.964
comEC/celB	Streptococcus mitis SK321	46.707	98.817	0.462
comEC/celB	Streptococcus pneumoniae TIGR4	44.91	98.817	0.444
comEC/celB	Streptococcus pneumoniae Rx1	44.311	98.817	0.438
comEC/celB	Streptococcus pneumoniae D39	44.311	98.817	0.438
comEC/celB	Streptococcus pneumoniae R6	44.311	98.817	0.438
comEC/celB	Streptococcus mitis NCTC 12261	43.713	98.817	0.432
comEC	Latilactobacillus sakei subsp. sakei 23K	38.037	96.45	0.367