Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A3K93_RS11425 Genome accession   NZ_CP015594
Coordinates   2367505..2368734 (+) Length   409 a.a.
NCBI ID   WP_067731323.1    Uniprot ID   A0A172YRE3
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362505..2373734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11380 (A3K93_11380) rimP 2362863..2363387 (-) 525 WP_067731319.1 ribosome maturation factor RimP -
  A3K93_RS11410 (A3K93_11410) secG 2364343..2364672 (-) 330 WP_067731320.1 preprotein translocase subunit SecG -
  A3K93_RS11415 (A3K93_11415) tpiA 2364686..2365477 (-) 792 WP_067731321.1 triose-phosphate isomerase -
  A3K93_RS11420 (A3K93_11420) pilB 2365762..2367471 (+) 1710 WP_067731322.1 type IV-A pilus assembly ATPase PilB Machinery gene
  A3K93_RS11425 (A3K93_11425) pilC 2367505..2368734 (+) 1230 WP_067731323.1 type II secretion system F family protein Machinery gene
  A3K93_RS11430 (A3K93_11430) pilD 2368734..2369594 (+) 861 WP_067731324.1 A24 family peptidase Machinery gene
  A3K93_RS11435 (A3K93_11435) coaE 2369596..2370192 (+) 597 WP_067731325.1 dephospho-CoA kinase -
  A3K93_RS11440 (A3K93_11440) - 2370211..2371131 (-) 921 WP_081408536.1 DMT family transporter -
  A3K93_RS11445 (A3K93_11445) rlmB 2371165..2371914 (-) 750 WP_067731326.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A3K93_RS11450 (A3K93_11450) - 2372055..2372378 (-) 324 WP_067731327.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44975.50 Da        Isoelectric Point: 9.8687

>NTDB_id=181259 A3K93_RS11425 WP_067731323.1 2367505..2368734(+) (pilC) [Acinetobacter sp. NCu2D-2]
MATAKKGQMMPTFSYEGIDRKGVKIKGELPARNMALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVAMSEWTQKYWFLLIIFIAVII
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNCVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVVAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=181259 A3K93_RS11425 WP_067731323.1 2367505..2368734(+) (pilC) [Acinetobacter sp. NCu2D-2]
ATGGCAACAGCGAAAAAAGGTCAGATGATGCCAACCTTCAGTTATGAAGGGATTGACCGTAAAGGTGTAAAAATCAAGGG
GGAATTACCCGCTCGTAATATGGCACTCGCTAAAGTGACGCTGCGTAAACAAGGCATCAGCATCAAGAGCATTCGAGAAA
AGAAAAAGAATATTCTTGAAGGCTTAATGAAAAAGAAAGTTACGACGCTTGATATCACAATCTTTACCCGTCAGCTTGCC
ACGATGATGAAAGCAGGTGTACCACTCGTACAAGGGTTTGAAATTGTCGCTGAAGGTCTCGAAAATCCTGCAATGCGCGA
AGTGGTATTAGGGATTAAAGGCGAAGTCGAAGGCGGTAATACCTTCGCTGGGGCTCTGCGTAAATACCCCCAATATTTTG
ATAAATTGTTCTGCTCTTTGGTTGAATCTGGTGAACAATCAGGTGCGCTTGAGACCATGCTTGATCGTGTTGCAATTTAT
AAAGAAAAAAGCGAGCTATTAAAGCAAAAAATTAAAAAAGCCATGAAATATCCAGCGACTGTTATTGTCGTCGCTGTCAT
CGTAACAATTATTTTGATGGTCAAAGTTGTTCCTGTATTCCAAGATCTTTTTTCGTCTTTTGGCGCTGACTTGCCCGCCT
TCACAAAAATGGTCGTTGCAATGTCTGAATGGACACAAAAGTATTGGTTCCTCTTGATTATTTTTATTGCAGTAATTATT
ACAGCTTTCTTGGAAGCTAAAAAGCGTAGTAAAAAATTCCGTGATTTCCTGGATAAAGCTGCACTTAAAGCGCCTATTTT
TGGTGATTTAGTTTATAAAGCGATTATTGCTCGCTATAGCAGAACACTTGCAACAACGTTTGCTGCGGGTGTTCCCTTAA
TTGATGCCCTTGAATCGACAGCGGGTGCAACCAACAACTGTGTCTATGAAGATGCTGTAATGAAAATCCGTGAAGATGTC
GCCACAGGTCAACAGCTGCAATTTGCTATGCGGGTCACCAACAAATTCCCATCAATGGCGGTACAAATGGTCGCTATTGG
TGAAGAGTCAGGTGCGCTAGATGCGATGCTCGATAAAGTCGCAACCCATTATGAAAATGAAGTTGACAACGCCGTTGACG
GCTTAACTGCCATGATGGAACCTCTGATTATGGCAATTTTAGGCGTCCTCGTCGGTGGTCTCGTCGTTGCAATGTATCTA
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YRE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.136

99.022

0.883
  pilC Acinetobacter baylyi ADP1

82.512

99.267

0.819
  pilC Pseudomonas stutzeri DSM 10701

60.837

99.267

0.604
  pilC Legionella pneumophila strain ERS1305867

53.518

97.311

0.521
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.998

99.511

0.428
  pilC Vibrio campbellii strain DS40M4

41.646

98.044

0.408
  pilC Thermus thermophilus HB27

36.908

98.044

0.362

Multiple sequence alignment